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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 24 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DM137619.1 emblrelpat SOYBEAN EVENT MON89788 AND METHODS ... 1222 bp synthetic construct QT-EVE-GM-006 139 bp View
DM137625.1 emblrelpat SOYBEAN EVENT MON89788 AND METHODS ... 6466 bp synthetic construct QT-EVE-GM-006 139 bp View
FB572986.1 emblrelpat Sequence 3 from Patent WO2006130436. 1222 bp synthetic construct QT-EVE-GM-006 139 bp View
FB572992.1 emblrelpat Sequence 9 from Patent WO2006130436. 6466 bp synthetic construct QT-EVE-GM-006 139 bp View
GV597333.1 emblrelpat Sequence 3 from patent US 7632985. 1222 bp unidentified QT-EVE-GM-006 139 bp View
GV597339.1 emblrelpat Sequence 9 from patent US 7632985. 6466 bp unidentified QT-EVE-GM-006 139 bp View
GY509618.1 emblrelpat Sequence 3 from patent US 8053184. 1222 bp unidentified QT-EVE-GM-006 139 bp View
GY509624.1 emblrelpat Sequence 9 from patent US 8053184. 6466 bp unidentified QT-EVE-GM-006 139 bp View
HK481993.1 emblrelpat Sequence 3 from patent US 8969006. 1222 bp unidentified QT-EVE-GM-006 139 bp View
HK481999.1 emblrelpat Sequence 9 from patent US 8969006. 6466 bp unidentified QT-EVE-GM-006 139 bp View
HK658373.1 emblrelpat Sequence 3 from patent US 9017947. 1222 bp unidentified QT-EVE-GM-006 139 bp View
HK658379.1 emblrelpat Sequence 9 from patent US 9017947. 6466 bp unidentified QT-EVE-GM-006 139 bp View
HW805116.1 emblrelpat JP 2015006192-A/3: SOYBEAN EVENT MO... 1222 bp synthetic construct QT-EVE-GM-006 139 bp View
HW805122.1 emblrelpat JP 2015006192-A/9: SOYBEAN EVENT MO... 6466 bp synthetic construct QT-EVE-GM-006 139 bp View
JA039999.1 emblrelpat Sequence 3 from Patent EP2275561. 1222 bp synthetic construct QT-EVE-GM-006 139 bp View
JA040005.1 emblrelpat Sequence 9 from Patent EP2275561. 6466 bp synthetic construct QT-EVE-GM-006 139 bp View
LP000129.1 emblrelpat Sequence 3 from Patent EP2975129. 1222 bp synthetic construct QT-EVE-GM-006 139 bp View
LP000135.1 emblrelpat Sequence 9 from Patent EP2975129. 6466 bp synthetic construct QT-EVE-GM-006 139 bp View
MI510441.1 emblrelpat Sequence 3 from patent US 9944945. 1222 bp unidentified QT-EVE-GM-006 139 bp View
MI510447.1 emblrelpat Sequence 9 from patent US 9944945. 6466 bp unidentified QT-EVE-GM-006 139 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.