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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 18 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB180963.1 nt Glycine max DNA, transgene of Round... 511 bp Glycine max QT-EVE-GM-005 84 bp View
AB180965.1 nt Glycine max DNA, transgene of Round... 473 bp Glycine max QT-EVE-GM-005 84 bp View
AB180967.1 nt Glycine max DNA, transgene of Round... 276 bp Glycine max QT-EVE-GM-005 84 bp View
AB180968.1 nt Glycine max DNA, transgene of Round... 259 bp Glycine max QT-EVE-GM-005 84 bp View
AJ308514.1 nt Synthetic construct for E35S promot... 390 bp synthetic construct QT-EVE-GM-005 84 bp View
CS543247.1 emblrelpat Sequence 1 from Patent WO2007015945. 291 bp synthetic construct QT-EVE-GM-005 84 bp View
DM159814.1 emblrelpat Quantitative detection method of ge... 390 bp unidentified QT-EVE-GM-005 84 bp View
DM159815.1 emblrelpat Quantitative detection method of ge... 380 bp unidentified QT-EVE-GM-005 84 bp View
HC043988.1 emblrelpat Sequence 1 from Patent EP2112224. 291 bp synthetic construct QT-EVE-GM-005 84 bp View
HW479040.1 emblrelpat JP 2013063082-A/8: Quantitative det... 390 bp unidentified QT-EVE-GM-005 84 bp View
HW479041.1 emblrelpat JP 2013063082-A/9: Quantitative det... 380 bp synthetic construct QT-EVE-GM-005 84 bp View
JX434027.1 nt GM reference vector pTLH10, partial... 3360 bp GM reference vector pTLH10 QT-EVE-GM-005 84 bp View
JX434028.1 nt GM reference vector pTLE8, partial ... 3664 bp GM reference vector pTLE8 QT-EVE-GM-005 84 bp View
KH534098.1 emblrelpat Sequence 25 from patent US 9562267. 8605 bp unidentified QT-EVE-GM-005 84 bp View
LT727196.1 nt Plant expression vector pAS104, com... 4307 bp Plant expression vector pAS104 QT-EVE-GM-005 84 bp View
NRN_CS543247 nrnl1 Sequence 1 from Patent WO2007015945... 291 bp unidentified QT-EVE-GM-005 84 bp View
NRN_DM159814 nrnl1 Quantitative detection method of ge... 390 bp unidentified QT-EVE-GM-005 84 bp View
NRN_DM159815 nrnl1 Quantitative detection method of ge... 380 bp unidentified QT-EVE-GM-005 84 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.