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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 9 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DI227399.1 emblrelpat KR 1020110063817-A/6: SOYBEAN TRANS... 13224 bp artificial sequences QT-EVE-GM-003 86 bp View
GZ625415.1 emblrelpat Sequence 6 from patent US 8329989. 13224 bp unidentified QT-EVE-GM-003 86 bp View
HJ928458.1 emblrelpat Sequence 6 from patent US 8692080. 13224 bp unidentified QT-EVE-GM-003 86 bp View
HV699111.1 emblrelpat JP 2012503989-A/6: SOYBEAN TRANSGEN... 13224 bp synthetic construct QT-EVE-GM-003 86 bp View
HZ185371.1 emblrelpat JP 2015144602-A/6: SOYBEAN TRANSGEN... 13224 bp synthetic construct QT-EVE-GM-003 86 bp View
JA486740.1 emblrelpat Sequence 6 from Patent EP2328400. 13224 bp synthetic construct QT-EVE-GM-003 86 bp View
KH559681.1 emblrelpat Sequence 6 from patent US 9572311. 13224 bp unidentified QT-EVE-GM-003 86 bp View
MO186848.1 emblrelpat Sequence 6 from patent US 10344292. 13224 bp unidentified QT-EVE-GM-003 86 bp View
NRN_HV699111 nrnl1 JP 2012503989-A/6: SOYBEAN TRANSGEN... 13224 bp unidentified QT-EVE-GM-003 86 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.