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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 42 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DI244064.1 emblrelpat KR 1020120107476-A/3: ELITE EVENT E... 1408 bp artificial sequences QT-EVE-GM-001 70 bp View
DI244069.1 emblrelpat KR 1020120107476-A/8: ELITE EVENT E... 263 bp artificial sequences QT-EVE-GM-001 70 bp View
DI244072.1 emblrelpat KR 1020120107476-A/11: ELITE EVENT ... 17806 bp artificial sequences QT-EVE-GM-001 70 bp View
DI244147.1 emblrelpat KR 1020120107479-A/3: HERBICIDE TOL... 1408 bp artificial sequences QT-EVE-GM-001 70 bp View
DI244152.1 emblrelpat KR 1020120107479-A/8: HERBICIDE TOL... 263 bp artificial sequences QT-EVE-GM-001 70 bp View
DI244164.1 emblrelpat KR 1020120107479-A/20: HERBICIDE TO... 17806 bp artificial sequences QT-EVE-GM-001 70 bp View
HJ695407.1 emblrelpat Sequence 3 from patent US 8592650. 1408 bp unidentified QT-EVE-GM-001 70 bp View
HJ695412.1 emblrelpat Sequence 8 from patent US 8592650. 263 bp unidentified QT-EVE-GM-001 70 bp View
HJ695415.1 emblrelpat Sequence 11 from patent US 8592650. 17806 bp unidentified QT-EVE-GM-001 70 bp View
HJ710128.1 emblrelpat Sequence 3 from patent US 8642748. 1408 bp unidentified QT-EVE-GM-001 70 bp View
HJ710133.1 emblrelpat Sequence 8 from patent US 8642748. 263 bp unidentified QT-EVE-GM-001 70 bp View
HJ710136.1 emblrelpat Sequence 11 from patent US 8642748. 17806 bp unidentified QT-EVE-GM-001 70 bp View
HK747726.1 emblrelpat Sequence 3 from patent US 9062324. 1408 bp unidentified QT-EVE-GM-001 70 bp View
HK747731.1 emblrelpat Sequence 8 from patent US 9062324. 263 bp unidentified QT-EVE-GM-001 70 bp View
HK747743.1 emblrelpat Sequence 20 from patent US 9062324. 17806 bp unidentified QT-EVE-GM-001 70 bp View
HW241792.1 emblrelpat JP 2013511294-A/3: Herbicide tolera... 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
HW241797.1 emblrelpat JP 2013511294-A/8: Herbicide tolera... 263 bp synthetic construct QT-EVE-GM-001 70 bp View
HW241809.1 emblrelpat JP 2013511294-A/20: Herbicide toler... 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
HW247719.1 emblrelpat JP 2013511293-A/3: Elite Event EE-G... 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
HW247724.1 emblrelpat JP 2013511293-A/8: Elite Event EE-G... 263 bp synthetic construct QT-EVE-GM-001 70 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.