Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 6 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR568473.1 emblrelpat Sequence 7 from patent US 6740488. 320 bp unidentified QT-EVE-GH-003 87 bp View
AX528400.1 emblrelpat Sequence 7 from Patent WO0234946. 320 bp synthetic construct QT-EVE-GH-003 87 bp View
EA087794.1 emblrelpat Sequence 7 from patent US 7189514. 320 bp unidentified QT-EVE-GH-003 87 bp View
GX613992.1 emblrelpat Sequence 7 from patent US 7807357. 320 bp unidentified QT-EVE-GH-003 87 bp View
GX660824.1 emblrelpat Sequence 7 from patent US 7820392. 320 bp unidentified QT-EVE-GH-003 87 bp View
NRN_AX528400 nrnl1 Sequence 7 from Patent WO0234946. ... 320 bp unidentified QT-EVE-GH-003 87 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.