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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 14 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR275289.1 emblrelpat Sequence 18 from patent US 6506963. 537 bp unidentified QT-EVE-BN-002 130 bp View
AR275309.1 emblrelpat Sequence 38 from patent US 6506963. 522 bp unidentified QT-EVE-BN-002 130 bp View
AR321700.1 emblrelpat Sequence 18 from patent US 6563026. 537 bp unidentified QT-EVE-BN-002 130 bp View
AR321720.1 emblrelpat Sequence 38 from patent US 6563026. 522 bp unidentified QT-EVE-BN-002 130 bp View
AX172457.1 emblrelpat Sequence 18 from Patent WO0141558. 537 bp synthetic construct QT-EVE-BN-002 130 bp View
AX172477.1 emblrelpat Sequence 38 from Patent WO0141558. 522 bp synthetic construct QT-EVE-BN-002 130 bp View
GV638084.1 emblrelpat Sequence 18 from patent US 7659095. 537 bp unidentified QT-EVE-BN-002 130 bp View
GV638104.1 emblrelpat Sequence 38 from patent US 7659095. 522 bp unidentified QT-EVE-BN-002 130 bp View
GY365453.1 emblrelpat Sequence 18 from patent US 8026352. 537 bp unidentified QT-EVE-BN-002 130 bp View
GY365473.1 emblrelpat Sequence 38 from patent US 8026352. 522 bp unidentified QT-EVE-BN-002 130 bp View
GZ592712.1 emblrelpat Sequence 18 from patent US 8309699. 537 bp unidentified QT-EVE-BN-002 130 bp View
GZ592732.1 emblrelpat Sequence 38 from patent US 8309699. 522 bp unidentified QT-EVE-BN-002 130 bp View
NRN_AX172457 nrnl1 Sequence 18 from Patent WO0141558. ... 537 bp unidentified QT-EVE-BN-002 130 bp View
NRN_AX172477 nrnl1 Sequence 38 from Patent WO0141558. ... 522 bp unidentified QT-EVE-BN-002 130 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.