Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A02451.1 emblrelpat Nucleotide sequence 2 from patent n... 549 bp unidentified QL-ELE-00-026 60 bp View
A02457.1 emblrelpat Nucleotide sequence 8 from patent n... 838 bp unidentified QL-ELE-00-026 60 bp View
A02465.1 emblrelpat Synthetic gene for polypeptide havi... 549 bp synthetic construct QL-ELE-00-026 60 bp View
A02471.1 emblrelpat Nucleotide sequence 8 from patent n... 838 bp unidentified QL-ELE-00-026 60 bp View
A12456.1 emblrelpat oligonucleotide encoding a protein ... 549 bp synthetic construct QL-ELE-00-026 60 bp View
A12463.1 emblrelpat small fragment of pBG1 subcloned in... 838 bp synthetic construct QL-ELE-00-026 60 bp View
A18053.1 emblrelpat DNA for transforming monocotyledono... 4883 bp synthetic construct QL-ELE-00-026 60 bp View
A23334.1 emblrelpat PVE108 plasmid DNA 5620 bp Escherichia coli QL-ELE-00-026 60 bp View
A23633.1 emblrelpat Plasmid pVE149 6376 bp unidentified QL-ELE-00-026 60 bp View
A60108.1 emblrelpat Sequence 1 from Patent WO9706267. 4946 bp Transformation vector pTHW107 QL-ELE-00-026 60 bp View
A60109.1 emblrelpat Sequence 2 from Patent WO9706267. 6548 bp Plasmid PTS172 QL-ELE-00-026 60 bp View
A60111.1 emblrelpat Sequence 4 from Patent WO9706267. 6291 bp Transformation vector pVE136 QL-ELE-00-026 60 bp View
A60112.1 emblrelpat Sequence 5 from Patent WO9706267. 5560 bp Transformation vector pTHW142 QL-ELE-00-026 60 bp View
A71437.1 emblrelpat Sequence 7 from Patent WO9810081. 5349 bp unidentified QL-ELE-00-026 60 bp View
A71440.1 emblrelpat Sequence 10 from Patent WO9810081. 5611 bp unidentified QL-ELE-00-026 60 bp View
A75886.1 emblrelpat Sequence 1 from Patent WO9321335. 4883 bp unidentified QL-ELE-00-026 60 bp View
A76915.1 emblrelpat Sequence 1 from Patent EP0757102. 4946 bp Transformation vector pTHW107 QL-ELE-00-026 60 bp View
A76916.1 emblrelpat Sequence 2 from Patent EP0757102. 6548 bp Plasmid PTS172 QL-ELE-00-026 60 bp View
AB003141.1 nt Arabidopsis thaliana transgenic lin... 4475 bp Arabidopsis thaliana QL-ELE-00-026 60 bp View
AB003141.1 emblreltgn Arabidopsis thaliana transgenic lin... 4475 bp Arabidopsis thaliana QL-ELE-00-026 60 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.