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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1558 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A02774.1 emblrelpat Artificial phosphinothricin resista... 558 bp synthetic construct QL-ELE-00-025 108 bp View
A02776.1 emblrelpat Artificial sequence phosphinothrici... 558 bp synthetic construct QL-ELE-00-025 108 bp View
A10510.1 emblrelpat Artificial sequence for PTC resistance 507 bp synthetic construct QL-ELE-00-025 108 bp View
A10512.1 emblrelpat Artificial sequence for PTC resistence 507 bp synthetic construct QL-ELE-00-025 108 bp View
A17371.1 emblrelpat Artificial sequence for N-acetyltra... 564 bp synthetic construct QL-ELE-00-025 108 bp View
A17375.1 emblrelpat Nucleotide sequence 6 from patent n... 564 bp unidentified QL-ELE-00-025 108 bp View
A29189.1 emblrelpat Acetyltranferase DNA with SalI link... 559 bp synthetic construct QL-ELE-00-025 108 bp View
A29190.1 emblrelpat Acetyltranferase DNA with SalI link... 558 bp synthetic construct QL-ELE-00-025 108 bp View
A29201.1 emblrelpat Synthetic DNA for phosphinothricin ... 559 bp synthetic construct QL-ELE-00-025 108 bp View
A29202.1 emblrelpat Synthetic DNA for phosphinothricin ... 559 bp synthetic construct QL-ELE-00-025 108 bp View
A95052.1 emblrelpat Sequence 9 from Patent WO9929880. 4186 bp unidentified QL-ELE-00-025 108 bp View
AM182233.1 nt Zea mays transgenic insert TC-1507,... 1301 bp Zea mays QL-ELE-00-025 108 bp View
AM182233.1 emblreltgn Zea mays transgenic insert TC-1507,... 1301 bp Zea mays QL-ELE-00-025 108 bp View
AR070829.1 emblrelpat Sequence 1 from patent US 5908810. 559 bp unidentified QL-ELE-00-025 108 bp View
AR110600.1 emblrelpat Sequence 7 from patent US 6114608. 568 bp unidentified QL-ELE-00-025 108 bp View
AR110602.1 emblrelpat Sequence 9 from patent US 6114608. 7378 bp unidentified QL-ELE-00-025 108 bp View
AR150999.1 emblrelpat Sequence 7 from patent US 6229075. 568 bp unidentified QL-ELE-00-025 108 bp View
AR151001.1 emblrelpat Sequence 9 from patent US 6229075. 7378 bp unidentified QL-ELE-00-025 108 bp View
AR152422.1 emblrelpat Sequence 7 from patent US 6232533. 568 bp unidentified QL-ELE-00-025 108 bp View
AR152424.1 emblrelpat Sequence 9 from patent US 6232533. 7378 bp unidentified QL-ELE-00-025 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.