Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 1055 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF294979.1 nt Binary vector pINDEX1, complete seq... 14203 bp Binary vector pINDEX1 QL-ELE-00-024 87 bp View
AF294980.1 nt Binary vector pINDEX2, complete seq... 14230 bp Binary vector pINDEX2 QL-ELE-00-024 87 bp View
AF294981.1 nt Binary vector pINDEX4, complete seq... 12072 bp Binary vector pINDEX4 QL-ELE-00-024 87 bp View
AF294982.1 nt Binary vector pINDEX3, complete seq... 12942 bp Binary vector pINDEX3 QL-ELE-00-024 87 bp View
AF309825.2 nt Plant expression vector pER8, compl... 11522 bp Plant expression vector pER8 QL-ELE-00-024 87 bp View
AF330636.1 nt Plant DNA excision vector pX6-GFP, ... 14103 bp Plant DNA excision vector pX6-GFP QL-ELE-00-024 87 bp View
AR143709.1 emblrelpat Sequence 1 from patent US 6204436. 8012 bp unidentified QL-ELE-00-024 87 bp View
AR143709.1 emblrelpat Sequence 1 from patent US 6204436. 8012 bp unidentified QL-ELE-00-024 87 bp View
AR143712.1 emblrelpat Sequence 4 from patent US 6204436. 8798 bp unidentified QL-ELE-00-024 87 bp View
AR143712.1 emblrelpat Sequence 4 from patent US 6204436. 8798 bp unidentified QL-ELE-00-024 87 bp View
AR143713.1 emblrelpat Sequence 5 from patent US 6204436. 8418 bp unidentified QL-ELE-00-024 87 bp View
AR143713.1 emblrelpat Sequence 5 from patent US 6204436. 8418 bp unidentified QL-ELE-00-024 87 bp View
AR225313.1 emblrelpat Sequence 5 from patent US 6441277. 10846 bp unidentified QL-ELE-00-024 87 bp View
AR225314.1 emblrelpat Sequence 6 from patent US 6441277. 10900 bp unidentified QL-ELE-00-024 87 bp View
AR438378.1 emblrelpat Sequence 5 from patent US 6663906. 10846 bp unidentified QL-ELE-00-024 87 bp View
AR438379.1 emblrelpat Sequence 6 from patent US 6663906. 10900 bp unidentified QL-ELE-00-024 87 bp View
AR491631.1 emblrelpat Sequence 5 from patent US 6716474. 10846 bp unidentified QL-ELE-00-024 87 bp View
AR491632.1 emblrelpat Sequence 6 from patent US 6716474. 10900 bp unidentified QL-ELE-00-024 87 bp View
AR606726.1 emblrelpat Sequence 19 from patent US 6821732. 11522 bp unidentified QL-ELE-00-024 87 bp View
AR703936.1 emblrelpat Sequence 7 from patent US 6927321. 632 bp unidentified QL-ELE-00-024 87 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.