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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB303064.1 nt Binary vector pUB-GW-GFP DNA, compl... 11720 bp Binary vector pUB-GW-GFP QL-ELE-00-023 137 bp View
AB303065.1 nt Binary vector pUB-GW-Hyg DNA, compl... 12063 bp Binary vector pUB-GW-Hyg QL-ELE-00-023 137 bp View
AB303066.1 nt Binary vector pUB-GWS-GFP DNA, comp... 13840 bp Binary vector pUB-GWS-GFP QL-ELE-00-023 137 bp View
AB303067.1 nt Binary vector pUB-GWS-Hyg DNA, comp... 14183 bp Binary vector pUB-GWS-Hyg QL-ELE-00-023 137 bp View
AB303068.1 nt Binary vector pUB-GFP DNA, complete... 10031 bp Binary vector pUB-GFP QL-ELE-00-023 137 bp View
AB303069.1 nt Binary vector pUB-Hyg DNA, complete... 10374 bp Binary vector pUB-Hyg QL-ELE-00-023 137 bp View
AB684626.1 nt Cloning vector pSolycp00001 DNA, co... 11143 bp Cloning vector pSolycp00001 QL-ELE-00-023 137 bp View
AB684627.1 nt Cloning vector pSolycp00002 DNA, co... 14305 bp Cloning vector pSolycp00002 QL-ELE-00-023 137 bp View
AB684628.1 nt Cloning vector pSolycp00003 DNA, co... 14309 bp Cloning vector pSolycp00003 QL-ELE-00-023 137 bp View
AB684629.1 nt Cloning vector pSolycp00004 DNA, co... 14312 bp Cloning vector pSolycp00004 QL-ELE-00-023 137 bp View
AB684630.1 nt Cloning vector pSolycp00005 DNA, co... 11811 bp Cloning vector pSolycp00005 QL-ELE-00-023 137 bp View
AB684631.1 nt Cloning vector pSolycp00006 DNA, co... 11781 bp Cloning vector pSolycp00006 QL-ELE-00-023 137 bp View
AB684632.1 nt Cloning vector pSolycp00007 DNA, co... 11812 bp Cloning vector pSolycp00007 QL-ELE-00-023 137 bp View
AB684633.1 nt Cloning vector pSolycp00008 DNA, co... 11812 bp Cloning vector pSolycp00008 QL-ELE-00-023 137 bp View
AB684634.1 nt Cloning vector pSolycp00009 DNA, co... 11899 bp Cloning vector pSolycp00009 QL-ELE-00-023 137 bp View
AB684635.1 nt Cloning vector pSolycp00010 DNA, co... 11812 bp Cloning vector pSolycp00010 QL-ELE-00-023 137 bp View
AB684636.1 nt Cloning vector pSolycp00011 DNA, co... 11811 bp Cloning vector pSolycp00011 QL-ELE-00-023 137 bp View
AB684637.1 nt Cloning vector pSolycp00012 DNA, co... 11812 bp Cloning vector pSolycp00012 QL-ELE-00-023 137 bp View
AB684638.1 nt Cloning vector pSolycp00013 DNA, co... 11786 bp Cloning vector pSolycp00013 QL-ELE-00-023 137 bp View
AB684639.1 nt Cloning vector pSolycp00014 DNA, co... 11778 bp Cloning vector pSolycp00014 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.