Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A18052.1 emblrelpat chimaeric gene (coding sequence of ... 1287 bp synthetic construct QL-ELE-00-007 180 bp View
A18053.1 emblrelpat DNA for transforming monocotyledono... 4883 bp synthetic construct QL-ELE-00-007 180 bp View
A23334.1 emblrelpat PVE108 plasmid DNA 5620 bp Escherichia coli QL-ELE-00-007 180 bp View
A23334.1 emblrelpat PVE108 plasmid DNA 5620 bp Escherichia coli QL-ELE-00-007 180 bp View
A23633.1 emblrelpat Plasmid pVE149 6376 bp unidentified QL-ELE-00-007 180 bp View
A23633.1 emblrelpat Plasmid pVE149 6376 bp unidentified QL-ELE-00-007 180 bp View
A23998.1 emblrelpat pTE4 expression vector 7049 bp synthetic construct QL-ELE-00-007 180 bp View
A26453.1 emblrelpat Recombinant soya beta-1,3-glucanase... 1829 bp Glycine max QL-ELE-00-007 180 bp View
A32909.1 emblrelpat Chimeric endochitinase gene 1863 bp Nicotiana tabacum QL-ELE-00-007 180 bp View
A40106.1 emblrelpat Sequence 14 from Patent WO9421793. 4284 bp unidentified QL-ELE-00-007 180 bp View
A40108.1 emblrelpat Sequence 16 from Patent WO9421793. 1863 bp unidentified QL-ELE-00-007 180 bp View
A59870.1 emblrelpat Sequence 2 from Patent WO9706269. 1138 bp unidentified QL-ELE-00-007 180 bp View
A60108.1 emblrelpat Sequence 1 from Patent WO9706267. 4946 bp Transformation vector pTHW107 QL-ELE-00-007 180 bp View
A60109.1 emblrelpat Sequence 2 from Patent WO9706267. 6548 bp Plasmid PTS172 QL-ELE-00-007 180 bp View
A60111.1 emblrelpat Sequence 4 from Patent WO9706267. 6291 bp Transformation vector pVE136 QL-ELE-00-007 180 bp View
A60111.1 emblrelpat Sequence 4 from Patent WO9706267. 6291 bp Transformation vector pVE136 QL-ELE-00-007 180 bp View
A71435.1 emblrelpat Sequence 5 from Patent WO9810081. 4032 bp unidentified QL-ELE-00-007 180 bp View
A71436.1 emblrelpat Sequence 6 from Patent WO9810081. 563 bp unidentified QL-ELE-00-007 180 bp View
A71440.1 emblrelpat Sequence 10 from Patent WO9810081. 5611 bp unidentified QL-ELE-00-007 180 bp View
A75886.1 emblrelpat Sequence 1 from Patent WO9321335. 4883 bp unidentified QL-ELE-00-007 180 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.