Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A95052.1 emblrelpat Sequence 9 from Patent WO9929880. 4186 bp unidentified QL-CON-00-011 98 bp View
AR193436.1 emblrelpat Sequence 10 from patent US 6346655. 13737 bp unidentified QL-CON-00-011 111 bp View
AR371484.1 emblrelpat Sequence 1 from patent US 6395485. 3983 bp unidentified QL-CON-00-011 111 bp View
AR373962.1 emblrelpat Sequence 8 from patent US 6603062. 4186 bp unidentified QL-CON-00-011 98 bp View
AR430221.1 emblrelpat Sequence 10 from patent US 6646184. 13737 bp unidentified QL-CON-00-011 111 bp View
AR723962.1 emblrelpat Sequence 1 from patent US 6951929. 3983 bp unidentified QL-CON-00-011 111 bp View
AR882131.1 emblrelpat Sequence 10 from patent US 7049421. 13737 bp unidentified QL-CON-00-011 111 bp View
AX195438.1 emblrelpat Sequence 1 from Patent WO0151654. 3983 bp synthetic construct QL-CON-00-011 111 bp View
BD014476.1 emblrelpat JP 2001136983-A/18: Transgenic corn... 601 bp synthetic construct QL-CON-00-011 111 bp View
BD014493.1 emblrelpat JP 2001136983-A/35: Transgenic corn... 820 bp synthetic construct QL-CON-00-011 111 bp View
BD105559.1 emblrelpat Method of constructing transgenic p... 4186 bp unidentified QL-CON-00-011 98 bp View
BD247867.1 emblrelpat JP 2002540787-A/7: Transgenic plant... 13737 bp synthetic construct QL-CON-00-011 111 bp View
BD378188.1 emblrelpat Methods and kits for identifying e... 3983 bp synthetic construct QL-CON-00-011 111 bp View
CQ924483.1 emblrelpat Sequence 10 from Patent EP1477557. 13737 bp synthetic construct QL-CON-00-011 111 bp View
CQ945862.1 emblrelpat Sequence 24 from Patent WO2004099447. 11361 bp synthetic construct QL-CON-00-011 102 bp View
CQ945863.1 emblrelpat Sequence 25 from Patent WO2004099447. 6186 bp synthetic construct QL-CON-00-011 102 bp View
CQ945865.1 emblrelpat Sequence 27 from Patent WO2004099447. 3347 bp synthetic construct QL-CON-00-011 102 bp View
CS566036.1 emblrelpat Sequence 23 from Patent WO2006039376. 11922 bp synthetic construct QL-CON-00-011 102 bp View
CS566037.1 emblrelpat Sequence 24 from Patent WO2006039376. 7390 bp synthetic construct QL-CON-00-011 102 bp View
CS566040.1 emblrelpat Sequence 27 from Patent WO2006039376. 2830 bp synthetic construct QL-CON-00-011 102 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.