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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 42 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HW247727.1 emblrelpat JP 2013511293-A/11: Elite Event EE-... 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
JB255985.1 emblrelpat Sequence 3 from Patent EP2503873. 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
JB255990.1 emblrelpat Sequence 8 from Patent EP2503873. 263 bp synthetic construct QT-EVE-GM-001 70 bp View
JB256002.1 emblrelpat Sequence 20 from Patent EP2503873. 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
JB357857.1 emblrelpat Sequence 3 from Patent EP2504454. 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
JB357862.1 emblrelpat Sequence 8 from Patent EP2504454. 263 bp synthetic construct QT-EVE-GM-001 70 bp View
JB357865.1 emblrelpat Sequence 11 from Patent EP2504454. 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
KH729823.1 emblrelpat Sequence 3 from patent US 9631202. 1408 bp unidentified QT-EVE-GM-001 70 bp View
KH729828.1 emblrelpat Sequence 8 from patent US 9631202. 263 bp unidentified QT-EVE-GM-001 70 bp View
KH729831.1 emblrelpat Sequence 11 from patent US 9631202. 17806 bp unidentified QT-EVE-GM-001 70 bp View
KH838999.1 emblrelpat Sequence 3 from patent US 9683242. 1408 bp unidentified QT-EVE-GM-001 70 bp View
KH839004.1 emblrelpat Sequence 8 from patent US 9683242. 263 bp unidentified QT-EVE-GM-001 70 bp View
KH839016.1 emblrelpat Sequence 20 from patent US 9683242. 17806 bp unidentified QT-EVE-GM-001 70 bp View
LF938423.1 emblrelpat JP 2016187343-A/3: Herbicide tolera... 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
LF938428.1 emblrelpat JP 2016187343-A/8: Herbicide tolera... 263 bp synthetic construct QT-EVE-GM-001 70 bp View
LF938440.1 emblrelpat JP 2016187343-A/20: Herbicide toler... 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
LF938867.1 emblrelpat JP 2016195597-A/3: Elite Event EE-G... 1408 bp synthetic construct QT-EVE-GM-001 70 bp View
LF938872.1 emblrelpat JP 2016195597-A/8: Elite Event EE-G... 263 bp synthetic construct QT-EVE-GM-001 70 bp View
LF938875.1 emblrelpat JP 2016195597-A/11: Elite Event EE-... 17806 bp synthetic construct QT-EVE-GM-001 70 bp View
MO559463.1 emblrelpat Sequence 3 from patent US 10494681. 1408 bp unidentified QT-EVE-GM-001 70 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.