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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EA021066.1 emblrelpat Sequence 25 from patent US 7132291. 10677 bp unidentified QT-ELE-00-002 68 bp View
EA021067.1 emblrelpat Sequence 26 from patent US 7132291. 10603 bp unidentified QT-ELE-00-002 68 bp View
EA072177.1 emblrelpat Sequence 1 from patent US 7179965. 15490 bp unidentified QT-ELE-00-002 68 bp View
EA072178.1 emblrelpat Sequence 2 from patent US 7179965. 9382 bp unidentified QT-ELE-00-002 68 bp View
EA359020.1 emblrelpat Sequence 24 from patent US 7288643. 11361 bp unidentified QT-ELE-00-002 68 bp View
EA359021.1 emblrelpat Sequence 25 from patent US 7288643. 6186 bp unidentified QT-ELE-00-002 68 bp View
EA359023.1 emblrelpat Sequence 27 from patent US 7288643. 3347 bp unidentified QT-ELE-00-002 68 bp View
EA419702.1 emblrelpat Sequence 22 from patent US 7323556. 2987 bp unidentified QT-ELE-00-002 68 bp View
EA419703.1 emblrelpat Sequence 23 from patent US 7323556. 11922 bp unidentified QT-ELE-00-002 68 bp View
EA419704.1 emblrelpat Sequence 24 from patent US 7323556. 7390 bp unidentified QT-ELE-00-002 68 bp View
EA419707.1 emblrelpat Sequence 27 from patent US 7323556. 2830 bp unidentified QT-ELE-00-002 68 bp View
EU554319.1 nt Yeast selection vector pIS421, comp... 6187 bp Yeast selection vector pIS421 QT-ELE-00-002 68 bp View
FJ410919.1 nt Binary vector pWY109, complete sequ... 5575 bp Binary vector pWY109 QT-ELE-00-002 68 bp View
FZ421805.1 emblrelpat JP 2010539989-A/1: METHODS FOR TRAN... 8448 bp synthetic construct QT-ELE-00-002 68 bp View
FZ421806.1 emblrelpat JP 2010539989-A/2: METHODS FOR TRAN... 8448 bp synthetic construct QT-ELE-00-002 68 bp View
GC515567.1 emblrelpat Sequence 12 from patent US 7407802. 4767 bp unidentified QT-ELE-00-002 68 bp View
GC515574.1 emblrelpat Sequence 24 from patent US 7407802. 10575 bp unidentified QT-ELE-00-002 68 bp View
GC515575.1 emblrelpat Sequence 25 from patent US 7407802. 10677 bp unidentified QT-ELE-00-002 68 bp View
GC515576.1 emblrelpat Sequence 26 from patent US 7407802. 10603 bp unidentified QT-ELE-00-002 68 bp View
GC560390.1 emblrelpat Sequence 24 from patent US 7417132. 11361 bp unidentified QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.