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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR947238.1 emblrelpat Sequence 12 from patent US 7112665. 838 bp unidentified QL-ELE-00-026 60 bp View
AX004880.1 emblrelpat Sequence 1 from Patent WO9910512. 2345 bp synthetic construct QL-ELE-00-026 60 bp View
AX012340.1 emblrelpat Sequence 4 from Patent EP0955371. 4883 bp synthetic construct QL-ELE-00-026 60 bp View
AX063413.1 emblrelpat Sequence 5 from Patent WO0100833. 7599 bp synthetic construct QL-ELE-00-026 60 bp View
AX093008.1 emblrelpat Sequence 13 from Patent WO0118192. 6865 bp synthetic construct QL-ELE-00-026 60 bp View
AX093011.1 emblrelpat Sequence 16 from Patent WO0118192. 5614 bp synthetic construct QL-ELE-00-026 60 bp View
AX093016.1 emblrelpat Sequence 21 from Patent WO0118192. 10003 bp synthetic construct QL-ELE-00-026 60 bp View
AX093017.1 emblrelpat Sequence 22 from Patent WO0118192. 8987 bp synthetic construct QL-ELE-00-026 60 bp View
AX127748.1 emblrelpat Sequence 1 from Patent WO0131042. 5865 bp synthetic construct QL-ELE-00-026 60 bp View
AX168079.1 emblrelpat Sequence 34 from Patent WO0144447. 26019 bp synthetic construct QL-ELE-00-026 60 bp View
AX168080.1 emblrelpat Sequence 35 from Patent WO0144447. 20119 bp synthetic construct QL-ELE-00-026 60 bp View
AX172440.1 emblrelpat Sequence 1 from Patent WO0141558. 4946 bp synthetic construct QL-ELE-00-026 60 bp View
AX172441.1 emblrelpat Sequence 2 from Patent WO0141558. 4832 bp synthetic construct QL-ELE-00-026 60 bp View
AX235900.1 emblrelpat Sequence 6 from Patent WO0164926. 615 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
AX286863.1 emblrelpat Sequence 17 from Patent WO0181600. 572 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
AX467608.1 emblrelpat Sequence 18 from Patent WO0234926. 835 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
AX544372.1 emblrelpat Sequence 25 from Patent WO02066660. 8045 bp unidentified QL-ELE-00-026 60 bp View
AX705319.1 emblrelpat Sequence 6 from Patent WO03013224. 9555 bp synthetic construct QL-ELE-00-026 60 bp View
AX705320.1 emblrelpat Sequence 7 from Patent WO03013224. 4182 bp synthetic construct QL-ELE-00-026 60 bp View
AX743820.1 emblrelpat Sequence 1 from Patent WO03031632. 10635 bp synthetic construct QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.