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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018995.1 nt Gateway binary vector pGWB688 DNA, ... 11423 bp Gateway binary vector pGWB688 QL-ELE-00-026 60 bp View
AP018996.1 nt Gateway binary vector pGWB691 DNA, ... 11585 bp Gateway binary vector pGWB691 QL-ELE-00-026 60 bp View
AR007513.1 emblrelpat Sequence 3 from patent US 5750867. 5620 bp unidentified QL-ELE-00-026 60 bp View
AR007527.1 emblrelpat Sequence 17 from patent US 5750867. 4808 bp unidentified QL-ELE-00-026 60 bp View
AR084079.1 emblrelpat Sequence 3 from patent US 5977433. 5620 bp unidentified QL-ELE-00-026 60 bp View
AR084093.1 emblrelpat Sequence 17 from patent US 5977433. 4808 bp unidentified QL-ELE-00-026 60 bp View
AR095109.1 emblrelpat Sequence 4 from patent US 6002070. 4883 bp unidentified QL-ELE-00-026 60 bp View
AR098307.1 emblrelpat Sequence 1 from patent US 6074876. 4946 bp unidentified QL-ELE-00-026 60 bp View
AR098308.1 emblrelpat Sequence 2 from patent US 6074876. 6548 bp unidentified QL-ELE-00-026 60 bp View
AR098310.1 emblrelpat Sequence 4 from patent US 6074876. 6291 bp unidentified QL-ELE-00-026 60 bp View
AR098311.1 emblrelpat Sequence 5 from patent US 6074876. 5560 bp unidentified QL-ELE-00-026 60 bp View
AR098315.1 emblrelpat Sequence 4 from patent US 6074877. 4883 bp unidentified QL-ELE-00-026 60 bp View
AR118422.1 emblrelpat Sequence 1 from patent US 6140553. 2345 bp unidentified QL-ELE-00-026 60 bp View
AR118423.1 emblrelpat Sequence 2 from patent US 6140553. 1086 bp unidentified QL-ELE-00-026 60 bp View
AR207455.1 emblrelpat Sequence 7 from patent US 6372960. 5349 bp unidentified QL-ELE-00-026 60 bp View
AR207458.1 emblrelpat Sequence 10 from patent US 6372960. 5611 bp unidentified QL-ELE-00-026 60 bp View
AR207481.1 emblrelpat Sequence 1 from patent US 6372963. 2345 bp unidentified QL-ELE-00-026 60 bp View
AR207482.1 emblrelpat Sequence 2 from patent US 6372963. 1086 bp unidentified QL-ELE-00-026 60 bp View
AR209012.1 emblrelpat Sequence 19 from patent US 6384207. 9335 bp unidentified QL-ELE-00-026 60 bp View
AR238845.1 emblrelpat Sequence 1 from patent US 6468747. 4161 bp unidentified QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.