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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ251014.1 nt Transformation binary vector pBAR-3... 3236 bp Transformation binary vector pBAR-35S QL-ELE-00-026 60 bp View
AM295157.1 nt Cloning vector pGWLuc 7979 bp Cloning vector pGWLuc QL-ELE-00-026 60 bp View
AM884371.1 nt Cloning vector pGBPGWC 7652 bp Cloning vector pGBPGWC QL-ELE-00-026 60 bp View
AM884372.1 nt Cloning vector pGBPGWG 7652 bp Cloning vector pGBPGWG QL-ELE-00-026 60 bp View
AM884373.1 nt Cloning vector pGBPGWY 7652 bp Cloning vector pGBPGWY QL-ELE-00-026 60 bp View
AM884386.1 nt Cloning vector pGBGWC 7109 bp Cloning vector pGBGWC QL-ELE-00-026 60 bp View
AM884387.1 nt Cloning vector pGBGWG 7109 bp Cloning vector pGBGWG QL-ELE-00-026 60 bp View
AM884388.1 nt Cloning vector pGBGWY 7109 bp Cloning vector pGBGWY QL-ELE-00-026 60 bp View
AP018962.1 nt Gateway binary vector R4L1pGWB662 D... 11525 bp Gateway binary vector R4L1pGWB662 QL-ELE-00-026 60 bp View
AP018963.1 nt Gateway binary vector R4L1pGWB665 D... 11450 bp Gateway binary vector R4L1pGWB665 QL-ELE-00-026 60 bp View
AP018964.1 nt Gateway binary vector R4L1pGWB668 D... 11432 bp Gateway binary vector R4L1pGWB668 QL-ELE-00-026 60 bp View
AP018965.1 nt Gateway binary vector R4L1pGWB671 D... 11594 bp Gateway binary vector R4L1pGWB671 QL-ELE-00-026 60 bp View
AP018966.1 nt Gateway binary vector R4L1pGWB685 D... 11444 bp Gateway binary vector R4L1pGWB685 QL-ELE-00-026 60 bp View
AP018967.1 nt Gateway binary vector R4L1pGWB688 D... 11426 bp Gateway binary vector R4L1pGWB688 QL-ELE-00-026 60 bp View
AP018968.1 nt Gateway binary vector R4L1pGWB691 D... 11588 bp Gateway binary vector R4L1pGWB691 QL-ELE-00-026 60 bp View
AP018990.1 nt Gateway binary vector pGWB662 DNA, ... 11522 bp Gateway binary vector pGWB662 QL-ELE-00-026 60 bp View
AP018991.1 nt Gateway binary vector pGWB665 DNA, ... 11447 bp Gateway binary vector pGWB665 QL-ELE-00-026 60 bp View
AP018992.1 nt Gateway binary vector pGWB668 DNA, ... 11429 bp Gateway binary vector pGWB668 QL-ELE-00-026 60 bp View
AP018993.1 nt Gateway binary vector pGWB671 DNA, ... 11591 bp Gateway binary vector pGWB671 QL-ELE-00-026 60 bp View
AP018994.1 nt Gateway binary vector pGWB685 DNA, ... 11441 bp Gateway binary vector pGWB685 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.