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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB543169.1 nt Gateway binary vector R4pGWB643 DNA... 11408 bp Gateway binary vector R4pGWB643 QL-ELE-00-026 60 bp View
AB543170.1 nt Gateway binary vector R4pGWB650 DNA... 11408 bp Gateway binary vector R4pGWB650 QL-ELE-00-026 60 bp View
AB543171.1 nt Gateway binary vector R4pGWB653 DNA... 11369 bp Gateway binary vector R4pGWB653 QL-ELE-00-026 60 bp View
AB543172.1 nt Gateway binary vector R4pGWB659 DNA... 11405 bp Gateway binary vector R4pGWB659 QL-ELE-00-026 60 bp View
AB638627.1 nt LUC binary vector yy447 DNA, comple... 10459 bp LUC binary vector yy447 QL-ELE-00-026 60 bp View
AB638628.1 nt LUC binary vector yy449 DNA, comple... 10460 bp LUC binary vector yy449 QL-ELE-00-026 60 bp View
AB691954.1 nt Gateway binary vector R4L1pGWB632 D... 13216 bp Gateway binary vector R4L1pGWB632 QL-ELE-00-026 60 bp View
AB691955.1 nt Gateway binary vector R4L1pGWB633 D... 12499 bp Gateway binary vector R4L1pGWB633 QL-ELE-00-026 60 bp View
AB691956.1 nt Gateway binary vector R4L1pGWB635 D... 12340 bp Gateway binary vector R4L1pGWB635 QL-ELE-00-026 60 bp View
AB691957.1 nt Gateway binary vector R4L1pGWB640 D... 11407 bp Gateway binary vector R4L1pGWB640 QL-ELE-00-026 60 bp View
AB691958.1 nt Gateway binary vector R4L1pGWB643 D... 11407 bp Gateway binary vector R4L1pGWB643 QL-ELE-00-026 60 bp View
AB691959.1 nt Gateway binary vector R4L1pGWB650 D... 11404 bp Gateway binary vector R4L1pGWB650 QL-ELE-00-026 60 bp View
AB691960.1 nt Gateway binary vector R4L1pGWB659 D... 11401 bp Gateway binary vector R4L1pGWB659 QL-ELE-00-026 60 bp View
AB775897.1 nt Activation tagging vector pKANACB D... 7664 bp Activation tagging vector pKANACB QL-ELE-00-026 60 bp View
AF013602.1 nt Synthetic construct, Emericella nid... 941 bp synthetic construct QL-ELE-00-026 60 bp View
AF187951.1 nt Activation-tagging vector pSKI015, ... 10138 bp Activation-tagging vector pSKI015 QL-ELE-00-026 60 bp View
AF218816.1 nt Cloning vector pEGAD, complete sequ... 12594 bp Cloning vector pEGAD QL-ELE-00-026 60 bp View
AF404854.1 nt Binary vector pJawohl3-RNAi, comple... 5597 bp Binary vector pJawohl3-RNAi QL-ELE-00-026 60 bp View
AF408413.1 nt Binary vector pJawohl8-RNAi, comple... 9019 bp Binary vector pJawohl8-RNAi QL-ELE-00-026 60 bp View
AJ251013.1 nt Transformation binary vector pBAR-A... 2476 bp Transformation binary vector pBAR-A QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.