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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB543149.1 nt Gateway binary vector pGWB652 DNA, ... 12257 bp Gateway binary vector pGWB652 QL-ELE-00-026 60 bp View
AB543150.1 nt Gateway binary vector pGWB653 DNA, ... 11378 bp Gateway binary vector pGWB653 QL-ELE-00-026 60 bp View
AB543151.1 nt Gateway binary vector pGWB654 DNA, ... 12219 bp Gateway binary vector pGWB654 QL-ELE-00-026 60 bp View
AB543152.1 nt Gateway binary vector pGWB655 DNA, ... 12218 bp Gateway binary vector pGWB655 QL-ELE-00-026 60 bp View
AB543153.1 nt Gateway binary vector pGWB659 DNA, ... 11414 bp Gateway binary vector pGWB659 QL-ELE-00-026 60 bp View
AB543154.1 nt Gateway binary vector pGWB660 DNA, ... 12255 bp Gateway binary vector pGWB660 QL-ELE-00-026 60 bp View
AB543155.1 nt Gateway binary vector pGWB661 DNA, ... 12254 bp Gateway binary vector pGWB661 QL-ELE-00-026 60 bp View
AB543156.1 nt Gateway binary vector R4pGWB601 DNA... 10691 bp Gateway binary vector R4pGWB601 QL-ELE-00-026 60 bp View
AB543157.1 nt Gateway binary vector R4pGWB604 DNA... 11420 bp Gateway binary vector R4pGWB604 QL-ELE-00-026 60 bp View
AB543158.1 nt Gateway binary vector R4pGWB607 DNA... 10709 bp Gateway binary vector R4pGWB607 QL-ELE-00-026 60 bp View
AB543159.1 nt Gateway binary vector R4pGWB610 DNA... 10715 bp Gateway binary vector R4pGWB610 QL-ELE-00-026 60 bp View
AB543160.1 nt Gateway binary vector R4pGWB613 DNA... 10811 bp Gateway binary vector R4pGWB613 QL-ELE-00-026 60 bp View
AB543161.1 nt Gateway binary vector R4pGWB616 DNA... 10862 bp Gateway binary vector R4pGWB616 QL-ELE-00-026 60 bp View
AB543162.1 nt Gateway binary vector R4pGWB619 DNA... 11093 bp Gateway binary vector R4pGWB619 QL-ELE-00-026 60 bp View
AB543163.1 nt Gateway binary vector R4pGWB622 DNA... 11369 bp Gateway binary vector R4pGWB622 QL-ELE-00-026 60 bp View
AB543164.1 nt Gateway binary vector R4pGWB625 DNA... 10724 bp Gateway binary vector R4pGWB625 QL-ELE-00-026 60 bp View
AB543165.1 nt Gateway binary vector R4pGWB628 DNA... 11237 bp Gateway binary vector R4pGWB628 QL-ELE-00-026 60 bp View
AB543166.1 nt Gateway binary vector R4pGWB633 DNA... 12503 bp Gateway binary vector R4pGWB633 QL-ELE-00-026 60 bp View
AB543167.1 nt Gateway binary vector R4pGWB635 DNA... 12344 bp Gateway binary vector R4pGWB635 QL-ELE-00-026 60 bp View
AB543168.1 nt Gateway binary vector R4pGWB640 DNA... 11408 bp Gateway binary vector R4pGWB640 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.