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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB543129.1 nt Gateway binary vector pGWB620 DNA, ... 11943 bp Gateway binary vector pGWB620 QL-ELE-00-026 60 bp View
AB543130.1 nt Gateway binary vector pGWB621 DNA, ... 11948 bp Gateway binary vector pGWB621 QL-ELE-00-026 60 bp View
AB543131.1 nt Gateway binary vector pGWB622 DNA, ... 11363 bp Gateway binary vector pGWB622 QL-ELE-00-026 60 bp View
AB543132.1 nt Gateway binary vector pGWB623 DNA, ... 12219 bp Gateway binary vector pGWB623 QL-ELE-00-026 60 bp View
AB543133.1 nt Gateway binary vector pGWB624 DNA, ... 12221 bp Gateway binary vector pGWB624 QL-ELE-00-026 60 bp View
AB543134.1 nt Gateway binary vector pGWB625 DNA, ... 10733 bp Gateway binary vector pGWB625 QL-ELE-00-026 60 bp View
AB543135.1 nt Gateway binary vector pGWB626 DNA, ... 11574 bp Gateway binary vector pGWB626 QL-ELE-00-026 60 bp View
AB543136.1 nt Gateway binary vector pGWB627 DNA, ... 11576 bp Gateway binary vector pGWB627 QL-ELE-00-026 60 bp View
AB543137.1 nt Gateway binary vector pGWB628 DNA, ... 11231 bp Gateway binary vector pGWB628 QL-ELE-00-026 60 bp View
AB543138.1 nt Gateway binary vector pGWB629 DNA, ... 12087 bp Gateway binary vector pGWB629 QL-ELE-00-026 60 bp View
AB543139.1 nt Gateway binary vector pGWB633 DNA, ... 12497 bp Gateway binary vector pGWB633 QL-ELE-00-026 60 bp View
AB543140.1 nt Gateway binary vector pGWB635 DNA, ... 12353 bp Gateway binary vector pGWB635 QL-ELE-00-026 60 bp View
AB543141.1 nt Gateway binary vector pGWB640 DNA, ... 11417 bp Gateway binary vector pGWB640 QL-ELE-00-026 60 bp View
AB543142.1 nt Gateway binary vector pGWB641 DNA, ... 12258 bp Gateway binary vector pGWB641 QL-ELE-00-026 60 bp View
AB543143.1 nt Gateway binary vector pGWB642 DNA, ... 12260 bp Gateway binary vector pGWB642 QL-ELE-00-026 60 bp View
AB543144.1 nt Gateway binary vector pGWB643 DNA, ... 11402 bp Gateway binary vector pGWB643 QL-ELE-00-026 60 bp View
AB543145.1 nt Gateway binary vector pGWB644 DNA, ... 12258 bp Gateway binary vector pGWB644 QL-ELE-00-026 60 bp View
AB543146.1 nt Gateway binary vector pGWB645 DNA, ... 12260 bp Gateway binary vector pGWB645 QL-ELE-00-026 60 bp View
AB543147.1 nt Gateway binary vector pGWB650 DNA, ... 11417 bp Gateway binary vector pGWB650 QL-ELE-00-026 60 bp View
AB543148.1 nt Gateway binary vector pGWB651 DNA, ... 12258 bp Gateway binary vector pGWB651 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.