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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB240452.1 nt Cloning vector pBARST DNA, complete... 4977 bp Cloning vector pBARST QL-ELE-00-026 60 bp View
AB543110.1 nt Gateway binary vector pGWB601 DNA, ... 10700 bp Gateway binary vector pGWB601 QL-ELE-00-026 60 bp View
AB543111.1 nt Gateway binary vector pGWB602 DNA, ... 11541 bp Gateway binary vector pGWB602 QL-ELE-00-026 60 bp View
AB543112.1 nt Gateway binary vector pGWB602omega ... 11534 bp Gateway binary vector pGWB602omega QL-ELE-00-026 60 bp View
AB543113.1 nt Gateway binary vector pGWB604 DNA, ... 11407 bp Gateway binary vector pGWB604 QL-ELE-00-026 60 bp View
AB543114.1 nt Gateway binary vector pGWB605 DNA, ... 12270 bp Gateway binary vector pGWB605 QL-ELE-00-026 60 bp View
AB543115.1 nt Gateway binary vector pGWB606 DNA, ... 12263 bp Gateway binary vector pGWB606 QL-ELE-00-026 60 bp View
AB543116.1 nt Gateway binary vector pGWB607 DNA, ... 10703 bp Gateway binary vector pGWB607 QL-ELE-00-026 60 bp View
AB543117.1 nt Gateway binary vector pGWB608 DNA, ... 11559 bp Gateway binary vector pGWB608 QL-ELE-00-026 60 bp View
AB543118.1 nt Gateway binary vector pGWB609 DNA, ... 11561 bp Gateway binary vector pGWB609 QL-ELE-00-026 60 bp View
AB543119.1 nt Gateway binary vector pGWB610 DNA, ... 10709 bp Gateway binary vector pGWB610 QL-ELE-00-026 60 bp View
AB543120.1 nt Gateway binary vector pGWB611 DNA, ... 11565 bp Gateway binary vector pGWB611 QL-ELE-00-026 60 bp View
AB543121.1 nt Gateway binary vector pGWB612 DNA, ... 11567 bp Gateway binary vector pGWB612 QL-ELE-00-026 60 bp View
AB543122.1 nt Gateway binary vector pGWB613 DNA, ... 10805 bp Gateway binary vector pGWB613 QL-ELE-00-026 60 bp View
AB543123.1 nt Gateway binary vector pGWB614 DNA, ... 11661 bp Gateway binary vector pGWB614 QL-ELE-00-026 60 bp View
AB543124.1 nt Gateway binary vector pGWB615 DNA, ... 11663 bp Gateway binary vector pGWB615 QL-ELE-00-026 60 bp View
AB543125.1 nt Gateway binary vector pGWB616 DNA, ... 10856 bp Gateway binary vector pGWB616 QL-ELE-00-026 60 bp View
AB543126.1 nt Gateway binary vector pGWB617 DNA, ... 11712 bp Gateway binary vector pGWB617 QL-ELE-00-026 60 bp View
AB543127.1 nt Gateway binary vector pGWB618 DNA, ... 11714 bp Gateway binary vector pGWB618 QL-ELE-00-026 60 bp View
AB543128.1 nt Gateway binary vector pGWB619 DNA, ... 11087 bp Gateway binary vector pGWB619 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.