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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS353488.1 emblrelpat Sequence 19 from Patent EP1681347. 9080 bp synthetic construct QL-ELE-00-026 60 bp View
CS354153.1 emblrelpat Sequence 15 from Patent WO2006024509. 10632 bp synthetic construct QL-ELE-00-026 60 bp View
CS376391.1 emblrelpat Sequence 5 from Patent WO2006074956. 6082 bp synthetic construct QL-ELE-00-026 60 bp View
CS376392.1 emblrelpat Sequence 6 from Patent WO2006074956. 6085 bp synthetic construct QL-ELE-00-026 60 bp View
CS376393.1 emblrelpat Sequence 7 from Patent WO2006074956. 6102 bp synthetic construct QL-ELE-00-026 60 bp View
CS376394.1 emblrelpat Sequence 8 from Patent WO2006074956. 3852 bp synthetic construct QL-ELE-00-026 60 bp View
CS407639.1 emblrelpat Sequence 29 from Patent WO2006044508. 7525 bp synthetic construct QL-ELE-00-026 60 bp View
CS437393.1 emblrelpat Sequence 4 from Patent WO2006105946. 4683 bp synthetic construct QL-ELE-00-026 60 bp View
CS437394.1 emblrelpat Sequence 5 from Patent WO2006105946. 4992 bp synthetic construct QL-ELE-00-026 60 bp View
CS479313.1 emblrelpat Sequence 10 from Patent WO2006136351. 3900 bp synthetic construct QL-ELE-00-026 60 bp View
CS479314.1 emblrelpat Sequence 11 from Patent WO2006136351. 4680 bp synthetic construct QL-ELE-00-026 60 bp View
CS479315.1 emblrelpat Sequence 12 from Patent WO2006136351. 5490 bp synthetic construct QL-ELE-00-026 60 bp View
CS479316.1 emblrelpat Sequence 13 from Patent WO2006136351. 5606 bp synthetic construct QL-ELE-00-026 60 bp View
CS479317.1 emblrelpat Sequence 14 from Patent WO2006136351. 6464 bp synthetic construct QL-ELE-00-026 60 bp View
CS565780.1 emblrelpat Sequence 25 from Patent WO2006032469. 11811 bp synthetic construct QL-ELE-00-026 60 bp View
CS565781.1 emblrelpat Sequence 26 from Patent WO2006032469. 11829 bp synthetic construct QL-ELE-00-026 60 bp View
CS565782.1 emblrelpat Sequence 27 from Patent WO2006032469. 12393 bp synthetic construct QL-ELE-00-026 60 bp View
CS565783.1 emblrelpat Sequence 28 from Patent WO2006032469. 12414 bp synthetic construct QL-ELE-00-026 60 bp View
CS565784.1 emblrelpat Sequence 29 from Patent WO2006032469. 12366 bp synthetic construct QL-ELE-00-026 60 bp View
CS565785.1 emblrelpat Sequence 30 from Patent WO2006032469. 12384 bp synthetic construct QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.