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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON773612.1 nt Binary vector pFGC-proCas9 PMT targ... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View
ON773613.1 nt Binary vector pFGC-proCas9 FATB tar... 13732 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View
OQ632785.1 nt Cloning vector 35S-GWY-GAL4BD/pAM, ... 7480 bp Cloning vector 35S-GWY-GAL4BD/pAM QL-ELE-00-026 60 bp View
OQ632786.1 nt Cloning vector 35S-GWY-VP16/pAM, co... 7321 bp Cloning vector 35S-GWY-VP16/pAM QL-ELE-00-026 60 bp View
OQ632787.1 nt Cloning vector 35S-GAL4BD-GWY/Pam, ... 7480 bp Cloning vector 35S-GAL4BD-GWY/Pam QL-ELE-00-026 60 bp View
OQ632788.1 nt Cloning vector 35S-VP16-GWY/pAM, co... 7327 bp Cloning vector 35S-VP16-GWY/pAM QL-ELE-00-026 60 bp View
PA543191.1 emblrelpat WO 2022079927-A/1: Method for cultu... 552 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
PP001171.1 nt Binary vector pEG100-SW, complete s... 11151 bp Binary vector pEG100-SW QL-ELE-00-026 60 bp View
X05822.1 nt Streptomyces hygroscopicus bar gene... 835 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
X17220.1 nt Streptomyces hygroscopicus bar gene... 615 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
Y18556.1 nt Cloning vector pSLJ8313, T-DNA region 22574 bp Cloning vector pSLJ8313 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.