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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_JA779821 nrnl1 Sequence 17 from Patent EP2419514. 9312 bp unidentified QL-ELE-00-026 60 bp View
OK632018.1 nt Synthetic construct clone pZH210B o... 7436 bp synthetic construct QL-ELE-00-026 60 bp View
OL322082.1 nt Binary vector SCBV-CHN2:GUS, comple... 12229 bp Binary vector SCBV-CHN2:GUS QL-ELE-00-026 60 bp View
OL322083.1 nt Binary vector SCBV-FN39:GUS, comple... 12409 bp Binary vector SCBV-FN39:GUS QL-ELE-00-026 60 bp View
OL322084.1 nt Binary vector SCBV-GT127:GUS, compl... 12250 bp Binary vector SCBV-GT127:GUS QL-ELE-00-026 60 bp View
OL322085.1 nt Binary vector SCBV-CHN1:GUS, comple... 12411 bp Binary vector SCBV-CHN1:GUS QL-ELE-00-026 60 bp View
OL322086.1 nt Binary vector SCBMOV-MOR:GUS, compl... 12200 bp Binary vector SCBMOV-MOR:GUS QL-ELE-00-026 60 bp View
OL322087.1 nt Binary vector SCBV-TX:GUS, complete... 12391 bp Binary vector SCBV-TX:GUS QL-ELE-00-026 60 bp View
OL322088.1 nt Binary vector SCBV-FN2507:GUS, comp... 12460 bp Binary vector SCBV-FN2507:GUS QL-ELE-00-026 60 bp View
OL322089.1 nt Binary vector SCBV-YZ2060:GUS, comp... 12490 bp Binary vector SCBV-YZ2060:GUS QL-ELE-00-026 60 bp View
OL513440.1 nt . 10179 bp Vector pWMB111 QL-ELE-00-026 60 bp View
OM223084.1 nt Plant TransGene Stacking II system ... 17849 bp unidentified QL-ELE-00-026 60 bp View
OM223088.1 nt Plant Binary vector pYL1300B-UNiE, ... 8885 bp unidentified QL-ELE-00-026 60 bp View
OM228704.1 nt Binary Vector pYL-PV4MF3, complete ... 12373 bp Binary Vector pYL-PV4MF3 QL-ELE-00-026 60 bp View
OM228707.1 nt Binary Vector pYL-PV4MF6, complete ... 13457 bp Binary Vector pYL-PV4MF6 QL-ELE-00-026 60 bp View
OM228710.1 nt Binary Vector pYL-PV4MF9, complete ... 12049 bp Binary Vector pYL-PV4MF9 QL-ELE-00-026 60 bp View
ON773608.1 nt Binary vector pFGC-proCas9 UXS targ... 13732 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View
ON773609.1 nt Binary vector pFGC-proCas9 StPL1 ta... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View
ON773610.1 nt Binary vector pFGC-proCas9 GBSS tar... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View
ON773611.1 nt Binary vector pFGC-proCas9 PPO targ... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.