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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CQ797819.1 emblrelpat Sequence 25 from Patent WO2004029256. 6465 bp synthetic construct QL-ELE-00-026 60 bp View
CQ894841.1 emblrelpat Sequence 9 from Patent WO2004090140. 13466 bp synthetic construct QL-ELE-00-026 60 bp View
CQ894856.1 emblrelpat Sequence 24 from Patent WO2004090140. 12987 bp synthetic construct QL-ELE-00-026 60 bp View
CQ894857.1 emblrelpat Sequence 25 from Patent WO2004090140. 13226 bp synthetic construct QL-ELE-00-026 60 bp View
CQ975580.1 emblrelpat Sequence 1 from Patent EP1496125. 4946 bp unidentified QL-ELE-00-026 60 bp View
CQ975581.1 emblrelpat Sequence 2 from Patent EP1496125. 6548 bp Plasmid PTS172 QL-ELE-00-026 60 bp View
CQ975583.1 emblrelpat Sequence 4 from Patent EP1496125. 6291 bp Transformation vector pVE136 QL-ELE-00-026 60 bp View
CQ975584.1 emblrelpat Sequence 5 from Patent EP1496125. 5560 bp unidentified QL-ELE-00-026 60 bp View
CS007934.1 emblrelpat Sequence 1 from Patent EP1502955. 12739 bp synthetic construct QL-ELE-00-026 60 bp View
CS025573.1 emblrelpat Sequence 1 from Patent WO2005014827. 12739 bp synthetic construct QL-ELE-00-026 60 bp View
CS104337.1 emblrelpat Sequence 5 from Patent WO2005049842. 3262 bp synthetic construct QL-ELE-00-026 60 bp View
CS104338.1 emblrelpat Sequence 6 from Patent WO2005049842. 5345 bp synthetic construct QL-ELE-00-026 60 bp View
CS112438.1 emblrelpat Sequence 2 from Patent WO2005054483. 11169 bp synthetic construct QL-ELE-00-026 60 bp View
CS112439.1 emblrelpat Sequence 3 from Patent WO2005054483. 17062 bp synthetic construct QL-ELE-00-026 60 bp View
CS182458.1 emblrelpat Sequence 2 from Patent WO2005097999. 10870 bp Arabidopsis thaliana QL-ELE-00-026 60 bp View
CS183150.1 emblrelpat Sequence 3 from Patent WO2005098004. 12682 bp synthetic construct QL-ELE-00-026 60 bp View
CS247394.1 emblrelpat Sequence 1 from Patent WO2005121345. 10632 bp synthetic construct QL-ELE-00-026 60 bp View
CS247396.1 emblrelpat Sequence 3 from Patent WO2005121345. 11070 bp synthetic construct QL-ELE-00-026 60 bp View
CS353486.1 emblrelpat Sequence 17 from Patent EP1681347. 8885 bp synthetic construct QL-ELE-00-026 60 bp View
CS353487.1 emblrelpat Sequence 18 from Patent EP1681347. 9525 bp synthetic construct QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.