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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY995143.1 nt Binary vector pPZP 35S attR-hRluc, ... 12416 bp Binary vector pPZP 35S attR-hRluc QL-ELE-00-026 60 bp View
BD002968.1 emblrelpat JP 2000245485-A/2: Method for prepa... 615 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
BD013092.1 emblrelpat WO 2001024616-A/3: Method for produ... 5228 bp synthetic construct QL-ELE-00-026 60 bp View
BD013094.1 emblrelpat WO 2001024616-A/5: Method for produ... 7492 bp synthetic construct QL-ELE-00-026 60 bp View
BD069511.1 emblrelpat JP 2001511642-A/5: Improved BARSTAR... 5349 bp synthetic construct QL-ELE-00-026 60 bp View
BD069514.1 emblrelpat JP 2001511642-A/8: Improved BARSTAR... 5611 bp synthetic construct QL-ELE-00-026 60 bp View
BD074067.1 emblrelpat JP 2001514009-A/1: Improved Agrobac... 2345 bp synthetic construct QL-ELE-00-026 60 bp View
BD132709.1 emblrelpat JP 2002504824-A/18: Regulatory sequ... 9335 bp unidentified QL-ELE-00-026 60 bp View
BD235371.1 emblrelpat JP 2002521072-A/18: Translational r... 610 bp synthetic construct QL-ELE-00-026 60 bp View
BD242717.1 emblrelpat JP 2002528114-A/8: Glufosinate tole... 4161 bp synthetic construct QL-ELE-00-026 60 bp View
BD298342.1 emblrelpat CLEAN SYNTHETIC VECTORS, PLASMIDS, ... 6865 bp synthetic construct QL-ELE-00-026 60 bp View
BD298345.1 emblrelpat CLEAN SYNTHETIC VECTORS, PLASMIDS, ... 5614 bp synthetic construct QL-ELE-00-026 60 bp View
BD298350.1 emblrelpat CLEAN SYNTHETIC VECTORS, PLASMIDS, ... 10003 bp synthetic construct QL-ELE-00-026 60 bp View
BD298351.1 emblrelpat CLEAN SYNTHETIC VECTORS, PLASMIDS, ... 8987 bp synthetic construct QL-ELE-00-026 60 bp View
BD326252.1 emblrelpat Compositions and methods for haloge... 26019 bp synthetic construct QL-ELE-00-026 60 bp View
BD326253.1 emblrelpat Compositions and methods for haloge... 20119 bp synthetic construct QL-ELE-00-026 60 bp View
BD405296.1 emblrelpat TRANSGENIC PLANTS. 572 bp Streptomyces hygroscopicus QL-ELE-00-026 60 bp View
BD445711.1 emblrelpat A DNA construct containing advanced... 11046 bp unidentified QL-ELE-00-026 60 bp View
CQ774407.1 emblrelpat Sequence 12 from Patent WO2004013169. 8514 bp synthetic construct QL-ELE-00-026 60 bp View
CQ774408.1 emblrelpat Sequence 13 from Patent WO2004013169. 8692 bp synthetic construct QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.