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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2551 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AX840053.1 emblrelpat Sequence 122 from Patent WO03078629. 11667 bp synthetic construct QL-ELE-00-026 60 bp View
AX951937.1 emblrelpat Sequence 2 from Patent WO03093483. 13199 bp synthetic construct QL-ELE-00-026 60 bp View
AY093584.1 nt Cloning Vector pBANF-bar, complete ... 6761 bp Cloning Vector pBANF-bar QL-ELE-00-026 60 bp View
AY234330.1 nt Binary vector pLH7000, complete seq... 8911 bp Binary vector pLH7000 QL-ELE-00-026 60 bp View
AY234331.1 nt Binary vector pLH7500, complete seq... 8903 bp Binary vector pLH7500 QL-ELE-00-026 60 bp View
AY310901.1 nt Binary vector pFGC5941 phosphinothr... 11405 bp Binary vector pFGC5941 QL-ELE-00-026 60 bp View
AY346130.1 nt Zea mays transgenic clone pDE110 ph... 1115 bp Zea mays QL-ELE-00-026 60 bp View
AY346130.1 emblreltgn Zea mays transgenic clone pDE110 ph... 1115 bp Zea mays QL-ELE-00-026 60 bp View
AY436765.1 nt Binary vector pAMPAT-MCS, complete ... 5274 bp Binary vector pAMPAT-MCS QL-ELE-00-026 60 bp View
AY457636.1 nt Plant binary vector pXCS-HAStrep, c... 5332 bp Plant binary vector pXCS-HAStrep QL-ELE-00-026 60 bp View
AY568055.1 nt Cloning vector pAGRIKOLA, complete ... 10459 bp Cloning vector pAGRIKOLA QL-ELE-00-026 60 bp View
AY572837.1 nt Cloning vector pMCG161, complete se... 14105 bp Cloning vector pMCG161 QL-ELE-00-026 60 bp View
AY739897.1 nt Cloning vector pRGK335, complete se... 11051 bp Cloning vector pRGK335 QL-ELE-00-026 60 bp View
AY739898.1 nt Cloning vector pRGK336, complete se... 11700 bp Cloning vector pRGK336 QL-ELE-00-026 60 bp View
AY818376.1 nt Phosphinothricin resistance plant e... 4401 bp Phosphinothricin resistance plant expression vector pSAT6-bar QL-ELE-00-026 60 bp View
AY836546.1 nt T-DNA vector pDs-Lox, complete sequ... 9882 bp T-DNA vector pDs-Lox QL-ELE-00-026 60 bp View
AY860533.1 nt Cloning vector p713-905, complete s... 14999 bp Cloning vector p713-905 QL-ELE-00-026 60 bp View
AY860534.1 nt Cloning vector p713-947, complete s... 14789 bp Cloning vector p713-947 QL-ELE-00-026 60 bp View
AY860535.1 nt Cloning vector p713-1511, complete ... 13907 bp Cloning vector p713-1511 QL-ELE-00-026 60 bp View
AY995142.1 nt Binary vector pPZP 35S hRluc-attR, ... 12483 bp Binary vector pPZP 35S hRluc-attR QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.