Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 1055 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FW501728.1 emblrelpat ENHANCEMENT OF STRESS TOLERANCE IN ... 9833 bp synthetic construct QL-ELE-00-024 87 bp View
FW501729.1 emblrelpat ENHANCEMENT OF STRESS TOLERANCE IN ... 9833 bp synthetic construct QL-ELE-00-024 87 bp View
FW570814.1 emblrelpat JP 2010241817-A/44: NOVEL IMMUNOADH... 7129 bp unidentified QL-ELE-00-024 87 bp View
FZ417836.1 emblrelpat JP 2010538647-A/5: COMPOSITIONS AND... 7228 bp synthetic construct QL-ELE-00-024 87 bp View
FZ417837.1 emblrelpat JP 2010538647-A/6: COMPOSITIONS AND... 7222 bp synthetic construct QL-ELE-00-024 87 bp View
GC561422.1 emblrelpat Sequence 19 from patent US 7419785. 11522 bp unidentified QL-ELE-00-024 87 bp View
GC595711.1 emblrelpat Sequence 19 from patent US 7429650. 11522 bp unidentified QL-ELE-00-024 87 bp View
GC675829.1 emblrelpat Sequence 25 from patent US 7453025. 10312 bp unidentified QL-ELE-00-024 87 bp View
GC675830.1 emblrelpat Sequence 26 from patent US 7453025. 10312 bp unidentified QL-ELE-00-024 87 bp View
GC690533.1 emblrelpat Sequence 3 from patent US 7459603. 2538 bp unidentified QL-ELE-00-024 87 bp View
GM711646.1 emblrelpat Sequence 3 from Patent WO2008092935. 3561 bp synthetic construct QL-ELE-00-024 87 bp View
GM883154.1 emblrelpat Sequence 35 from Patent WO2008135467. 670 bp Pisum sativum QL-ELE-00-024 87 bp View
GN042880.1 emblrelpat Sequence 137 from Patent WO2009016202. 28346 bp synthetic construct QL-ELE-00-024 87 bp View
GP045365.1 emblrelpat Sequence 42 from patent US 7468475. 3328 bp unidentified QL-ELE-00-024 87 bp View
GP045366.1 emblrelpat Sequence 43 from patent US 7468475. 2746 bp unidentified QL-ELE-00-024 87 bp View
GP045370.1 emblrelpat Sequence 47 from patent US 7468475. 2746 bp unidentified QL-ELE-00-024 87 bp View
GP432609.1 emblrelpat Sequence 8 from patent US 7531716. 1998 bp unidentified QL-ELE-00-024 87 bp View
GP706137.1 emblrelpat Sequence 233 from patent US 7598429. 4276 bp unidentified QL-ELE-00-024 87 bp View
GP706137.1 emblrelpat Sequence 233 from patent US 7598429. 4276 bp unidentified QL-ELE-00-024 87 bp View
GP755645.1 emblrelpat Sequence 42 from patent US 7619146. 3328 bp unidentified QL-ELE-00-024 87 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.