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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1055 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_JA078178 nrnl1 Sequence 2 from Patent WO2011034946... 20500 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078179 nrnl1 Sequence 3 from Patent WO2011034946. 22395 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078180 nrnl1 Sequence 4 from Patent WO2011034946. 22517 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078181 nrnl1 Sequence 5 from Patent WO2011034946. 22248 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078182 nrnl1 Sequence 6 from Patent WO2011034946. 22370 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078183 nrnl1 Sequence 7 from Patent WO2011034946. 23111 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078183 nrnl1 Sequence 7 from Patent WO2011034946. 23111 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078184 nrnl1 Sequence 8 from Patent WO2011034946. 23068 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA078184 nrnl1 Sequence 8 from Patent WO2011034946. 23068 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA687153 nrnl1 Sequence 5 from Patent WO2011153186. 4427 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA687154 nrnl1 Sequence 6 from Patent WO2011153186. 6126 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA723399 nrnl1 Sequence 101 from Patent WO2011161093. 23777 bp unidentified QL-ELE-00-024 87 bp View
NRN_JA723399 nrnl1 Sequence 101 from Patent WO2011161093. 23777 bp unidentified QL-ELE-00-024 87 bp View
OL411875.1 nt Cloning vector pCambia2300-RUBY, co... 13787 bp Cloning vector pCambia2300-RUBY QL-ELE-00-024 87 bp View
X00806.1 nt Pea gene for rib-1,5-bisphospate ca... 2351 bp Pisum sativum QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.