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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1055 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GY016742.1 emblrelpat Sequence 80 from patent US 7888558. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY186489.1 emblrelpat Sequence 13 from patent US 7932432. 3074 bp unidentified QL-ELE-00-024 87 bp View
GY203003.1 emblrelpat Sequence 26 from patent US 7939715. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY203003.1 emblrelpat Sequence 26 from patent US 7939715. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY238133.1 emblrelpat Sequence 1586 from patent US 7956242. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY238133.1 emblrelpat Sequence 1586 from patent US 7956242. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY262884.1 emblrelpat Sequence 4837 from patent US 7960612. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY262884.1 emblrelpat Sequence 4837 from patent US 7960612. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY360141.1 emblrelpat Sequence 61 from patent US 8022274. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY360141.1 emblrelpat Sequence 61 from patent US 8022274. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY457374.1 emblrelpat Sequence 5100 from patent US 8030546. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY457374.1 emblrelpat Sequence 5100 from patent US 8030546. 4276 bp unidentified QL-ELE-00-024 87 bp View
GY472633.1 emblrelpat Sequence 5 from patent US 8034997. 5480 bp unidentified QL-ELE-00-024 87 bp View
GY472655.1 emblrelpat Sequence 25 from patent US 8034998. 10312 bp unidentified QL-ELE-00-024 87 bp View
GY472656.1 emblrelpat Sequence 26 from patent US 8034998. 10312 bp unidentified QL-ELE-00-024 87 bp View
GY509624.1 emblrelpat Sequence 9 from patent US 8053184. 6466 bp unidentified QL-ELE-00-024 87 bp View
GZ297063.1 emblrelpat Sequence 5 from patent US 8168860. 7228 bp unidentified QL-ELE-00-024 87 bp View
GZ297064.1 emblrelpat Sequence 6 from patent US 8168860. 7222 bp unidentified QL-ELE-00-024 87 bp View
GZ452728.1 emblrelpat Sequence 89 from patent US 8232455. 662 bp unidentified QL-ELE-00-024 87 bp View
GZ452749.1 emblrelpat Sequence 132 from patent US 8232455. 662 bp unidentified QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.