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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS204336.1 emblrelpat Sequence 44 from Patent WO2005108568. 4832 bp synthetic construct QL-ELE-00-023 137 bp View
CS204343.1 emblrelpat Sequence 51 from Patent WO2005108568. 15506 bp synthetic construct QL-ELE-00-023 137 bp View
CS323767.1 emblrelpat Sequence 3 from Patent WO2006004675. 10808 bp synthetic construct QL-ELE-00-023 137 bp View
CS540636.1 emblrelpat Sequence 15 from Patent WO2007012576. 216 bp unidentified QL-ELE-00-023 137 bp View
CS809558.1 emblrelpat Sequence 205 from Patent WO2006070227. 10018 bp synthetic construct QL-ELE-00-023 137 bp View
CS809558.1 emblrelpat Sequence 205 from Patent WO2006070227. 10018 bp synthetic construct QL-ELE-00-023 137 bp View
DD123294.1 emblrelpat Plant Artificial Chromosomes, Uses ... 11182 bp synthetic construct QL-ELE-00-023 137 bp View
DD123294.1 emblrelpat Plant Artificial Chromosomes, Uses ... 11182 bp synthetic construct QL-ELE-00-023 137 bp View
DD123295.1 emblrelpat Plant Artificial Chromosomes, Uses ... 8428 bp synthetic construct QL-ELE-00-023 137 bp View
DD123296.1 emblrelpat Plant Artificial Chromosomes, Uses ... 10549 bp synthetic construct QL-ELE-00-023 137 bp View
DD123299.1 emblrelpat Plant Artificial Chromosomes, Uses ... 12592 bp synthetic construct QL-ELE-00-023 137 bp View
DD123299.1 emblrelpat Plant Artificial Chromosomes, Uses ... 12592 bp synthetic construct QL-ELE-00-023 137 bp View
DD123301.1 emblrelpat Plant Artificial Chromosomes, Uses ... 10122 bp synthetic construct QL-ELE-00-023 137 bp View
DD123313.1 emblrelpat Plant Artificial Chromosomes, Uses ... 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DD123313.1 emblrelpat Plant Artificial Chromosomes, Uses ... 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DD141260.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 11182 bp synthetic construct QL-ELE-00-023 137 bp View
DD141260.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 11182 bp synthetic construct QL-ELE-00-023 137 bp View
DD141261.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 8428 bp synthetic construct QL-ELE-00-023 137 bp View
DD141263.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 10549 bp synthetic construct QL-ELE-00-023 137 bp View
DD141266.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 12592 bp synthetic construct QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.