European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM472563.1 nt Vector hyABE8e-SpRY, complete sequence. 17438 bp Vector hyABE8e-SpRY QL-ELE-00-023 137 bp View
OM938978.1 nt Oryza sativa Indica Group transgeni... 937 bp Oryza sativa Indica Group QL-ELE-00-023 137 bp View
OM938980.1 nt Oryza sativa Indica Group transgeni... 737 bp Oryza sativa Indica Group QL-ELE-00-023 137 bp View
OM981242.1 nt Oryza sativa Indica Group transgeni... 979 bp Oryza sativa Indica Group QL-ELE-00-023 137 bp View
ON018813.1 nt Oryza sativa Indica Group transgeni... 937 bp Oryza sativa Indica Group QL-ELE-00-023 137 bp View
ON018816.1 nt Oryza sativa Indica Group transgeni... 653 bp Oryza sativa Indica Group QL-ELE-00-023 137 bp View
OP757693.1 nt Cloning vector pMDC43-VirE2, comple... 11668 bp Cloning vector pMDC43-VirE2 QL-ELE-00-023 137 bp View
OQ732917.1 nt Binary vector pGK21.0402, complete ... 17142 bp Binary vector pGK21.0402 QL-ELE-00-023 137 bp View
OQ732917.1 nt Binary vector pGK21.0402, complete ... 17142 bp Binary vector pGK21.0402 QL-ELE-00-023 137 bp View
OQ732918.1 nt Binary vector pGK19.0923, complete ... 17064 bp Binary vector pGK19.0923 QL-ELE-00-023 137 bp View
OQ732918.1 nt Binary vector pGK19.0923, complete ... 17064 bp Binary vector pGK19.0923 QL-ELE-00-023 137 bp View
OR217441.1 nt System destination vector pDESattR1... 13143 bp System destination vector pDESattR1-4 QL-ELE-00-023 137 bp View
OR797711.1 nt Binary vector pCAMBIA 1301-GFP-alph... 14209 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin QL-ELE-00-023 137 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-023 137 bp View
OR802131.1 nt Transformation vector PIG2.0, compl... 8597 bp Transformation vector PIG2.0 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.