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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_JA466960 nrnl1 Sequence 23 from Patent EP2294198. 10449 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA466960 nrnl1 Sequence 23 from Patent EP2294198. 10449 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA537982 nrnl1 Sequence 56 from Patent EP2369910. 5327 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA537983 nrnl1 Sequence 57 from Patent EP2369910. 4943 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA723399 nrnl1 Sequence 101 from Patent WO2011161093. 23777 bp unidentified QL-ELE-00-023 137 bp View
OF089815.1 emblrelpat KR 1020200097003-A/21: Method for P... 12295 bp synthetic construct QL-ELE-00-023 137 bp View
OK563730.1 nt Binary vector pZH36, complete sequence. 14927 bp Binary vector pZH36 QL-ELE-00-023 137 bp View
OK632017.1 nt Binary vector pZH37, complete sequence. 14955 bp Binary vector pZH37 QL-ELE-00-023 137 bp View
OK632018.1 nt Synthetic construct clone pZH210B o... 7436 bp synthetic construct QL-ELE-00-023 137 bp View
OL322082.1 nt Binary vector SCBV-CHN2:GUS, comple... 12229 bp Binary vector SCBV-CHN2:GUS QL-ELE-00-023 137 bp View
OL322083.1 nt Binary vector SCBV-FN39:GUS, comple... 12409 bp Binary vector SCBV-FN39:GUS QL-ELE-00-023 137 bp View
OL322084.1 nt Binary vector SCBV-GT127:GUS, compl... 12250 bp Binary vector SCBV-GT127:GUS QL-ELE-00-023 137 bp View
OL322085.1 nt Binary vector SCBV-CHN1:GUS, comple... 12411 bp Binary vector SCBV-CHN1:GUS QL-ELE-00-023 137 bp View
OL322086.1 nt Binary vector SCBMOV-MOR:GUS, compl... 12200 bp Binary vector SCBMOV-MOR:GUS QL-ELE-00-023 137 bp View
OL322087.1 nt Binary vector SCBV-TX:GUS, complete... 12391 bp Binary vector SCBV-TX:GUS QL-ELE-00-023 137 bp View
OL322088.1 nt Binary vector SCBV-FN2507:GUS, comp... 12460 bp Binary vector SCBV-FN2507:GUS QL-ELE-00-023 137 bp View
OL322089.1 nt Binary vector SCBV-YZ2060:GUS, comp... 12490 bp Binary vector SCBV-YZ2060:GUS QL-ELE-00-023 137 bp View
OL411875.1 nt Cloning vector pCambia2300-RUBY, co... 13787 bp Cloning vector pCambia2300-RUBY QL-ELE-00-023 137 bp View
OL870854.1 nt Binary vector pZH83, complete sequence. 11882 bp Binary vector pZH83 QL-ELE-00-023 137 bp View
OL870855.1 nt Binary vector pZH84, complete sequence. 11849 bp Binary vector pZH84 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.