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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_GY152353 nrnl1 Sequence 108 from patent US 7919601. 12368 bp unidentified QL-ELE-00-023 137 bp View
NRN_GZ511762 nrnl1 Sequence 32 from patent US 8277849.... 185 bp unidentified QL-ELE-00-023 137 bp View
NRN_GZ511763 nrnl1 Sequence 36 from patent US 8277849.... 4080 bp unidentified QL-ELE-00-023 137 bp View
NRN_HC086757 nrnl1 Sequence 35 from Patent WO2009133145. 26755 bp unidentified QL-ELE-00-023 137 bp View
NRN_HC474755 nrnl1 Sequence 71 from Patent WO201002320... 28875 bp unidentified QL-ELE-00-023 137 bp View
NRN_HC918437 nrnl1 Sequence 5 from Patent WO2010061215. 9724 bp unidentified QL-ELE-00-023 137 bp View
NRN_HC918438 nrnl1 Sequence 6 from Patent WO2010061215. 12189 bp unidentified QL-ELE-00-023 137 bp View
NRN_HH825960 nrnl1 Sequence 1 from Patent WO2010102293. 9450 bp unidentified QL-ELE-00-023 137 bp View
NRN_HH825964 nrnl1 Sequence 5 from Patent WO2010102293. 8650 bp unidentified QL-ELE-00-023 137 bp View
NRN_HI574809 nrnl1 Sequence 19 from Patent EP2219434. 12159 bp unidentified QL-ELE-00-023 137 bp View
NRN_HI574809 nrnl1 Sequence 19 from Patent EP2219434. 12159 bp unidentified QL-ELE-00-023 137 bp View
NRN_HI929483 nrnl1 Sequence 15 from Patent WO200913029... 24631 bp unidentified QL-ELE-00-023 137 bp View
NRN_HI929484 nrnl1 Sequence 16 from Patent WO200913029... 24356 bp unidentified QL-ELE-00-023 137 bp View
NRN_HI929485 nrnl1 Sequence 17 from Patent WO200913029... 23990 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA078178 nrnl1 Sequence 2 from Patent WO2011034946... 20500 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA180320 nrnl1 Sequence 20 from Patent EP2294199. 10623 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA180320 nrnl1 Sequence 20 from Patent EP2294199. 10623 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA180321 nrnl1 Sequence 21 from Patent EP2294199. 11002 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA180321 nrnl1 Sequence 21 from Patent EP2294199. 11002 bp unidentified QL-ELE-00-023 137 bp View
NRN_JA279912 nrnl1 Sequence 4 from Patent WO2011008096. 11745 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.