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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018654.1 nt Gateway vector R4L1pMpGWB394 DNA, c... 13015 bp Gateway vector R4L1pMpGWB394 QL-ELE-00-023 137 bp View
AP018655.1 nt Gateway vector R4L1pMpGWB395 DNA, c... 12913 bp Gateway vector R4L1pMpGWB395 QL-ELE-00-023 137 bp View
AP018656.1 nt Gateway vector R4L1pMpGWB404 DNA, c... 12810 bp Gateway vector R4L1pMpGWB404 QL-ELE-00-023 137 bp View
AP018657.1 nt Gateway vector R4L1pMpGWB407 DNA, c... 11715 bp Gateway vector R4L1pMpGWB407 QL-ELE-00-023 137 bp View
AP018658.1 nt Gateway vector R4L1pMpGWB431 DNA, c... 12747 bp Gateway vector R4L1pMpGWB431 QL-ELE-00-023 137 bp View
AP018659.1 nt Gateway vector R4L1pMpGWB432 DNA, c... 13527 bp Gateway vector R4L1pMpGWB432 QL-ELE-00-023 137 bp View
AP018660.1 nt Gateway vector R4L1pMpGWB435 DNA, c... 12651 bp Gateway vector R4L1pMpGWB435 QL-ELE-00-023 137 bp View
AP018661.1 nt Gateway vector R4L1pMpGWB439 DNA, c... 11718 bp Gateway vector R4L1pMpGWB439 QL-ELE-00-023 137 bp View
AP018662.1 nt Gateway vector R4L1pMpGWB494 DNA, c... 11847 bp Gateway vector R4L1pMpGWB494 QL-ELE-00-023 137 bp View
AP018663.1 nt Gateway vector R4L1pMpGWB495 DNA, c... 11745 bp Gateway vector R4L1pMpGWB495 QL-ELE-00-023 137 bp View
AX840053.1 emblrelpat Sequence 122 from Patent WO03078629. 11667 bp synthetic construct QL-ELE-00-023 137 bp View
AX840053.1 emblrelpat Sequence 122 from Patent WO03078629. 11667 bp synthetic construct QL-ELE-00-023 137 bp View
AY178047.1 nt Expression vector pYPX143, complete... 15382 bp Expression vector pYPX143 QL-ELE-00-023 137 bp View
AY178048.1 nt Expression vector pYPX145, complete... 16520 bp Expression vector pYPX145 QL-ELE-00-023 137 bp View
AY178049.1 nt Expression vector pYPX245, complete... 16368 bp Expression vector pYPX245 QL-ELE-00-023 137 bp View
AY553053.1 nt Reporter vector pGSA1370, complete ... 10695 bp Reporter vector pGSA1370 QL-ELE-00-023 137 bp View
AY560325.1 nt Cloning vector pC1300intB-35SnosEX,... 9937 bp Cloning vector pC1300intB-35SnosEX QL-ELE-00-023 137 bp View
AY560326.1 nt Cloning vector pC1300intB-35SnosBK,... 9946 bp Cloning vector pC1300intB-35SnosBK QL-ELE-00-023 137 bp View
AY739899.1 nt Cloning vector pRGK337, complete se... 11881 bp Cloning vector pRGK337 QL-ELE-00-023 137 bp View
AY836546.1 nt T-DNA vector pDs-Lox, complete sequ... 9882 bp T-DNA vector pDs-Lox QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.