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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MY215720.1 emblrelpat Sequence 27 from patent US 11072798. 12866 bp unidentified QL-ELE-00-023 137 bp View
MY215721.1 emblrelpat Sequence 28 from patent US 11072798. 13841 bp unidentified QL-ELE-00-023 137 bp View
MZ374061.1 nt Expression vector pBHg-FfMnSOD1-OE ... 10162 bp Expression vector pBHg-FfMnSOD1-OE QL-ELE-00-023 137 bp View
MZ374062.1 nt Expression vector pBHg-FfMnSOD1-RNA... 10764 bp Expression vector pBHg-FfMnSOD1-RNAi QL-ELE-00-023 137 bp View
MZ374063.1 nt Expression vector pBHg-FfMnSOD2-OE ... 10210 bp Expression vector pBHg-FfMnSOD2-OE QL-ELE-00-023 137 bp View
MZ374064.1 nt Expression vector pBHg-FfMnSOD2-RNA... 10860 bp Expression vector pBHg-FfMnSOD2-RNAi QL-ELE-00-023 137 bp View
MZ374065.1 nt Expression vector pBHg-FfNoxA-OE se... 11584 bp Expression vector pBHg-FfNoxA-OE QL-ELE-00-023 137 bp View
MZ374066.1 nt Expression vector pBHg-FfNoxA-RNAi ... 10130 bp Expression vector pBHg-FfNoxA-RNAi QL-ELE-00-023 137 bp View
MZ374067.1 nt Expression vector pBHg-FfGs6-OE seq... 10989 bp Expression vector pBHg-FfGs6-OE QL-ELE-00-023 137 bp View
MZ420392.1 nt Cloning vector pBHg-eGFP, complete ... 10270 bp Cloning vector pBHg-eGFP QL-ELE-00-023 137 bp View
NRN_AX840053 nrnl1 Sequence 122 from Patent WO03078629. 11667 bp unidentified QL-ELE-00-023 137 bp View
NRN_AX840053 nrnl1 Sequence 122 from Patent WO03078629. 11667 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS204336 nrnl1 Sequence 44 from Patent WO2005108568. 4832 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS204343 nrnl1 Sequence 51 from Patent WO2005108568. 15506 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS323767 nrnl1 Sequence 3 from Patent WO2006004675... 10808 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS540636 nrnl1 Sequence 15 from Patent WO2007012576. 216 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS809558 nrnl1 Sequence 205 from Patent WO2006070227. 10018 bp unidentified QL-ELE-00-023 137 bp View
NRN_CS809558 nrnl1 Sequence 205 from Patent WO2006070227. 10018 bp unidentified QL-ELE-00-023 137 bp View
NRN_DD123294 nrnl1 Plant Artificial Chromosomes, Uses ... 11182 bp unidentified QL-ELE-00-023 137 bp View
NRN_DD123294 nrnl1 Plant Artificial Chromosomes, Uses ... 11182 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.