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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GZ544617.1 emblrelpat Sequence 32 from patent US 8298548. 185 bp unidentified QL-ELE-00-023 137 bp View
GZ544618.1 emblrelpat Sequence 36 from patent US 8298548. 4080 bp unidentified QL-ELE-00-023 137 bp View
GZ833715.1 emblrelpat Sequence 32 from patent US 8426676. 216 bp unidentified QL-ELE-00-023 137 bp View
GZ861789.1 emblrelpat Sequence 8 from patent US 8435767. 2615 bp unidentified QL-ELE-00-023 137 bp View
HB444288.1 emblrelpat Sequence 1011 from Patent WO2009077406. 216 bp Cauliflower mosaic virus QL-ELE-00-023 137 bp View
HC086757.1 emblrelpat Sequence 35 from Patent WO2009133145. 26755 bp synthetic construct QL-ELE-00-023 137 bp View
HC474755.1 emblrelpat Sequence 71 from Patent WO2010023202. 28875 bp synthetic construct QL-ELE-00-023 137 bp View
HC474763.1 emblrelpat Sequence 79 from Patent WO2010023202. 216 bp Cauliflower mosaic virus QL-ELE-00-023 137 bp View
HC918437.1 emblrelpat Sequence 5 from Patent WO2010061215. 9724 bp synthetic construct QL-ELE-00-023 137 bp View
HC918438.1 emblrelpat Sequence 6 from Patent WO2010061215. 12189 bp synthetic construct QL-ELE-00-023 137 bp View
HH825960.1 emblrelpat Sequence 1 from Patent WO2010102293. 9450 bp synthetic construct QL-ELE-00-023 137 bp View
HH825964.1 emblrelpat Sequence 5 from Patent WO2010102293. 8650 bp synthetic construct QL-ELE-00-023 137 bp View
HI539599.1 emblrelpat Sequence 5 from Patent EP2152849. 2435 bp synthetic construct QL-ELE-00-023 137 bp View
HI539619.1 emblrelpat Sequence 25 from Patent EP2152849. 2615 bp synthetic construct QL-ELE-00-023 137 bp View
HI574809.1 emblrelpat Sequence 19 from Patent EP2219434. 12159 bp synthetic construct QL-ELE-00-023 137 bp View
HI574809.1 emblrelpat Sequence 19 from Patent EP2219434. 12159 bp synthetic construct QL-ELE-00-023 137 bp View
HI929483.1 emblrelpat Sequence 15 from Patent WO2009130291. 24631 bp synthetic construct QL-ELE-00-023 137 bp View
HI929484.1 emblrelpat Sequence 16 from Patent WO2009130291. 24356 bp synthetic construct QL-ELE-00-023 137 bp View
HI929485.1 emblrelpat Sequence 17 from Patent WO2009130291. 23990 bp synthetic construct QL-ELE-00-023 137 bp View
HJ187156.1 emblrelpat Sequence 15 from patent US 8455035. 24631 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.