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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GX879629.1 emblrelpat Sequence 244 from patent US 7847154. 11809 bp unidentified QL-ELE-00-023 137 bp View
GX879629.1 emblrelpat Sequence 244 from patent US 7847154. 11809 bp unidentified QL-ELE-00-023 137 bp View
GX879630.1 emblrelpat Sequence 245 from patent US 7847154. 11241 bp unidentified QL-ELE-00-023 137 bp View
GX879630.1 emblrelpat Sequence 245 from patent US 7847154. 11241 bp unidentified QL-ELE-00-023 137 bp View
GX879631.1 emblrelpat Sequence 246 from patent US 7847154. 12113 bp unidentified QL-ELE-00-023 137 bp View
GX879631.1 emblrelpat Sequence 246 from patent US 7847154. 12113 bp unidentified QL-ELE-00-023 137 bp View
GX879632.1 emblrelpat Sequence 247 from patent US 7847154. 10291 bp unidentified QL-ELE-00-023 137 bp View
GX879632.1 emblrelpat Sequence 247 from patent US 7847154. 10291 bp unidentified QL-ELE-00-023 137 bp View
GX879633.1 emblrelpat Sequence 252 from patent US 7847154. 6255 bp unidentified QL-ELE-00-023 137 bp View
GX879634.1 emblrelpat Sequence 253 from patent US 7847154. 5690 bp unidentified QL-ELE-00-023 137 bp View
GX879635.1 emblrelpat Sequence 254 from patent US 7847154. 6558 bp unidentified QL-ELE-00-023 137 bp View
GX879636.1 emblrelpat Sequence 255 from patent US 7847154. 4683 bp unidentified QL-ELE-00-023 137 bp View
GY009165.1 emblrelpat Sequence 8 from patent US 7883882. 2615 bp unidentified QL-ELE-00-023 137 bp View
GY152353.1 emblrelpat Sequence 108 from patent US 7919601. 12368 bp unidentified QL-ELE-00-023 137 bp View
GY175914.1 emblrelpat Sequence 8 from patent US 7935515. 2615 bp unidentified QL-ELE-00-023 137 bp View
GZ337636.1 emblrelpat Sequence 8 from patent US 8187860. 2615 bp unidentified QL-ELE-00-023 137 bp View
GZ374484.1 emblrelpat Sequence 8 from patent US 8222010. 2615 bp unidentified QL-ELE-00-023 137 bp View
GZ508391.1 emblrelpat Sequence 8 from patent US 8268610. 2615 bp unidentified QL-ELE-00-023 137 bp View
GZ511762.1 emblrelpat Sequence 32 from patent US 8277849. 185 bp unidentified QL-ELE-00-023 137 bp View
GZ511763.1 emblrelpat Sequence 36 from patent US 8277849. 4080 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.