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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GN042880.1 emblrelpat Sequence 137 from Patent WO2009016202. 28346 bp synthetic construct QL-ELE-00-023 137 bp View
GN042880.1 emblrelpat Sequence 137 from Patent WO2009016202. 28346 bp synthetic construct QL-ELE-00-023 137 bp View
GP421486.1 emblrelpat Sequence 89 from patent US 7521240. 11182 bp unidentified QL-ELE-00-023 137 bp View
GP421486.1 emblrelpat Sequence 89 from patent US 7521240. 11182 bp unidentified QL-ELE-00-023 137 bp View
GP421487.1 emblrelpat Sequence 90 from patent US 7521240. 8428 bp unidentified QL-ELE-00-023 137 bp View
GP421489.1 emblrelpat Sequence 92 from patent US 7521240. 10549 bp unidentified QL-ELE-00-023 137 bp View
GP421492.1 emblrelpat Sequence 95 from patent US 7521240. 12592 bp unidentified QL-ELE-00-023 137 bp View
GP421492.1 emblrelpat Sequence 95 from patent US 7521240. 12592 bp unidentified QL-ELE-00-023 137 bp View
GP421494.1 emblrelpat Sequence 97 from patent US 7521240. 10122 bp unidentified QL-ELE-00-023 137 bp View
GP421505.1 emblrelpat Sequence 109 from patent US 7521240. 14627 bp unidentified QL-ELE-00-023 137 bp View
GP421505.1 emblrelpat Sequence 109 from patent US 7521240. 14627 bp unidentified QL-ELE-00-023 137 bp View
GQ870263.1 nt Plant RNAi vector pRNAi-LIC, comple... 12097 bp Plant RNAi vector pRNAi-LIC QL-ELE-00-023 137 bp View
GU564445.1 nt Binary vector pCOXS3-phiC31, comple... 12323 bp Binary vector pCOXS3-phiC31 QL-ELE-00-023 137 bp View
GU564446.1 nt Binary vector pN3-phiC31, complete ... 12743 bp Binary vector pN3-phiC31 QL-ELE-00-023 137 bp View
GX386306.1 emblrelpat Sequence 240 from patent US 7763775. 5214 bp unidentified QL-ELE-00-023 137 bp View
GX386307.1 emblrelpat Sequence 241 from patent US 7763775. 5118 bp unidentified QL-ELE-00-023 137 bp View
GX386308.1 emblrelpat Sequence 242 from patent US 7763775. 10821 bp unidentified QL-ELE-00-023 137 bp View
GX386308.1 emblrelpat Sequence 242 from patent US 7763775. 10821 bp unidentified QL-ELE-00-023 137 bp View
GX386309.1 emblrelpat Sequence 243 from patent US 7763775. 10905 bp unidentified QL-ELE-00-023 137 bp View
GX386309.1 emblrelpat Sequence 243 from patent US 7763775. 10905 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.