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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU259514.1 nt Expression vector pOsAct2-1-Tnos am... 10239 bp Expression vector pOsAct2-1-Tnos QL-ELE-00-023 137 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QL-ELE-00-023 137 bp View
EU327493.1 nt Transformation vector pC23HC, compl... 10947 bp Transformation vector pC23HC QL-ELE-00-023 137 bp View
EU327494.1 nt Transformation vector pC23HG, compl... 11396 bp Transformation vector pC23HG QL-ELE-00-023 137 bp View
EU327495.1 nt Transformation vector pC23LB, compl... 10640 bp Transformation vector pC23LB QL-ELE-00-023 137 bp View
EU327496.1 nt Transformation vector pC23LG, compl... 11900 bp Transformation vector pC23LG QL-ELE-00-023 137 bp View
EU327498.1 nt Binary vector pCLKSCLA25, complete ... 12186 bp Binary vector pCLKSCLA25 QL-ELE-00-023 137 bp View
EU327977.1 nt Binary vector pCCRE, complete sequence. 11484 bp Binary vector pCCRE QL-ELE-00-023 137 bp View
EU744547.1 nt Promoter probe vector pVR37, comple... 12588 bp Promoter probe vector pVR37 QL-ELE-00-023 137 bp View
EU760495.1 nt Promoter probe vector pRR21, comple... 12827 bp Promoter probe vector pRR21 QL-ELE-00-023 137 bp View
EU849663.1 nt Binary vector pCAMBIA1300-LMAR, com... 11566 bp Binary vector pCAMBIA1300-LMAR QL-ELE-00-023 137 bp View
EU849664.1 nt Binary vector pCAMBIA1300-MAR, comp... 10640 bp Binary vector pCAMBIA1300-MAR QL-ELE-00-023 137 bp View
FB700509.1 emblrelpat Sequence 5 from Patent WO2007107853. 8860 bp Agrobacterium QL-ELE-00-023 137 bp View
FJ172534.1 nt Gateway destination vector pMDC32-H... 12097 bp Gateway destination vector pMDC32-HPB QL-ELE-00-023 137 bp View
FJ172535.1 nt Gateway destination vector pMDC-pRP... 12768 bp Gateway destination vector pMDC-pRPS2-HPB QL-ELE-00-023 137 bp View
FJ268733.1 nt Cloning vector pRGK374, complete se... 11746 bp Cloning vector pRGK374 QL-ELE-00-023 137 bp View
FJ362598.1 nt Binary vector pCAMBIA1300-VE2-7S, c... 11288 bp Binary vector pCAMBIA1300-VE2-7S QL-ELE-00-023 137 bp View
FJ362599.1 nt Binary vector pCAMBIA1300-VE3-2S, c... 11369 bp Binary vector pCAMBIA1300-VE3-2S QL-ELE-00-023 137 bp View
FJ362600.1 nt Binary vector pCAMBIA1300-TMT-2S, c... 11375 bp Binary vector pCAMBIA1300-TMT-2S QL-ELE-00-023 137 bp View
FJ362601.1 nt Binary vector pCAMBIA1300-AT, compl... 12886 bp Binary vector pCAMBIA1300-AT QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.