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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DM131266.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DM131266.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DQ225751.1 nt Immobile Ac/T-DNA vector pKU352NA, ... 18090 bp Immobile Ac/T-DNA vector pKU352NA QL-ELE-00-023 137 bp View
DQ225752.1 nt Immobile Ac/T-DNA vector pNU400, co... 15970 bp Immobile Ac/T-DNA vector pNU400 QL-ELE-00-023 137 bp View
DQ370422.1 nt Gateway adapted binary vector pCGTA... 12907 bp Gateway adapted binary vector pCGTAG QL-ELE-00-023 137 bp View
DQ370423.1 nt Gateway adapted binary vector pCGTB... 13152 bp Gateway adapted binary vector pCGTBG QL-ELE-00-023 137 bp View
DQ370424.1 nt Gateway adapted binary vector pCGTE... 12241 bp Gateway adapted binary vector pCGTENG QL-ELE-00-023 137 bp View
DQ370425.1 nt Gateway adapted binary vector pCGTN... 13152 bp Gateway adapted binary vector pCGTNG QL-ELE-00-023 137 bp View
DQ370426.1 nt Binary vector pCsGFPBT, complete se... 11437 bp Binary vector pCsGFPBT QL-ELE-00-023 137 bp View
DQ452049.1 nt Binary vector pGPro1, complete sequ... 8833 bp Binary vector pGPro1 QL-ELE-00-023 137 bp View
DQ645631.1 nt Plant transformation vector pCre, c... 12358 bp Plant transformation vector pCre QL-ELE-00-023 137 bp View
DQ658215.1 nt Binary vector pCAMBIA1300-FAD1A, co... 10983 bp Binary vector pCAMBIA1300-FAD1A QL-ELE-00-023 137 bp View
DQ658216.1 nt Binary vector pCAMBIA1300-FAD2A, co... 10407 bp Binary vector pCAMBIA1300-FAD2A QL-ELE-00-023 137 bp View
DQ658217.1 nt Binary vector pCAMBIA1300-FAD2b, co... 10130 bp Binary vector pCAMBIA1300-FAD2b QL-ELE-00-023 137 bp View
DQ989355.1 nt Gene trapping Ds/T-DNA vector pDsG8... 16844 bp Gene trapping Ds/T-DNA vector pDsG8 QL-ELE-00-023 137 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QL-ELE-00-023 137 bp View
EF426459.1 nt Binary gene-trap vector piGL, compl... 16466 bp Binary gene-trap vector piGL QL-ELE-00-023 137 bp View
EF546437.1 nt Binary vector pGFPGUSplus, complete... 13701 bp Binary vector pGFPGUSplus QL-ELE-00-023 137 bp View
EU147786.1 nt Binary vector pGPro2, complete sequ... 8809 bp Binary vector pGPro2 QL-ELE-00-023 137 bp View
EU259513.1 nt Expression vector pOsAct2-Tnos amin... 11813 bp Expression vector pOsAct2-Tnos QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.