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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DD141266.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 12592 bp synthetic construct QL-ELE-00-023 137 bp View
DD141268.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 10122 bp synthetic construct QL-ELE-00-023 137 bp View
DD141279.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DD141279.1 emblrelpat CHROMOSOME-BASED PLATFORMS. 14627 bp synthetic construct QL-ELE-00-023 137 bp View
DI001458.1 emblrelpat PRODUCTION OF BIOLOGICALLY ACTIVE I... 4727 bp unidentified QL-ELE-00-023 137 bp View
DI104172.1 emblrelpat PRODUCTION OF RECOMBINANT PROTEINS ... 4553 bp unidentified QL-ELE-00-023 137 bp View
DI104332.1 emblrelpat A TRANSFORMATION METHOD FOR VIVIPAR... 12361 bp unidentified QL-ELE-00-023 137 bp View
DI104623.1 emblrelpat PRODUCTION OF RECOMBINANT PROTEINS ... 5683 bp unidentified QL-ELE-00-023 137 bp View
DI122223.1 emblrelpat Vector for Preparation of Transform... 9762 bp unidentified QL-ELE-00-023 137 bp View
DI123518.1 emblrelpat Vector for Preparation of Transform... 9978 bp unidentified QL-ELE-00-023 137 bp View
DI123906.1 emblrelpat Vector for Preparation of Transform... 9458 bp unidentified QL-ELE-00-023 137 bp View
DI175593.1 emblrelpat KR 1020100011173-A/1: Plant transfo... 5946 bp Agrobacterium tumefaciens QL-ELE-00-023 137 bp View
DI175593.1 emblrelpat KR 1020100011173-A/1: Plant transfo... 5946 bp Agrobacterium tumefaciens QL-ELE-00-023 137 bp View
DI198450.1 emblrelpat KR 1020110090565-A/7: Useful Vector... 10724 bp unidentified QL-ELE-00-023 137 bp View
DI198451.1 emblrelpat KR 1020110090565-A/8: Useful Vector... 11018 bp unidentified QL-ELE-00-023 137 bp View
DI206004.1 emblrelpat KR 1020120050058-A/7: Qualitative a... 600 bp artificial sequences QL-ELE-00-023 137 bp View
DI230979.1 emblrelpat KR 1020110091567-A/8: Production of... 2615 bp Saccharomyces cerevisiae QL-ELE-00-023 137 bp View
DI231082.1 emblrelpat KR 1020110096555-A/8: Manufacturing... 2615 bp Saccharomyces cerevisiae QL-ELE-00-023 137 bp View
DI351494.1 emblrelpat KR 1020130085374-A/8: FOOD COMPOSIT... 2615 bp Saccharomyces cerevisiae QL-ELE-00-023 137 bp View
DI351594.1 emblrelpat KR 1020130085374-A/152: FOOD COMPOS... 2435 bp synthetic construct QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.