European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 180 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HJ188113.1 emblrelpat Sequence 6 from patent US 8455198. 14416 bp unidentified QL-ELE-00-020 73 bp View
HJ188114.1 emblrelpat Sequence 7 from patent US 8455198. 6916 bp unidentified QL-ELE-00-020 73 bp View
HJ188115.1 emblrelpat Sequence 8 from patent US 8455198. 3801 bp unidentified QL-ELE-00-020 73 bp View
HJ934333.1 emblrelpat Sequence 37 from patent US 8700336. 105 bp unidentified QL-ELE-00-020 73 bp View
HJ934334.1 emblrelpat Sequence 38 from patent US 8700336. 105 bp unidentified QL-ELE-00-020 73 bp View
HJ934369.1 emblrelpat Sequence 73 from patent US 8700336. 97 bp unidentified QL-ELE-00-020 73 bp View
HQ154128.1 nt Oryza sativa Japonica Group transge... 6213 bp Oryza sativa Japonica Group QL-ELE-00-020 73 bp View
HQ154128.1 emblreltgn Oryza sativa Japonica Group transge... 6213 bp Oryza sativa Japonica Group QL-ELE-00-020 73 bp View
HW665082.1 emblrelpat JP 2013223510-A/37: Transgenic plan... 105 bp synthetic construct QL-ELE-00-020 73 bp View
HW665083.1 emblrelpat JP 2013223510-A/38: Transgenic plan... 105 bp synthetic construct QL-ELE-00-020 73 bp View
HW665118.1 emblrelpat JP 2013223510-A/73: Transgenic plan... 97 bp synthetic construct QL-ELE-00-020 73 bp View
I41421.1 emblrelpat Sequence 5 from patent US 5625136. 1845 bp unidentified QL-ELE-00-020 73 bp View
I75254.1 emblrelpat Sequence 3 from patent US 5689052. 3531 bp unidentified QL-ELE-00-020 73 bp View
I75356.1 emblrelpat Sequence 105 from patent US 5689052. 3484 bp unidentified QL-ELE-00-020 73 bp View
JD009657.1 emblrelpat Sequence 8 from Patent WO2014170345. 6426 bp synthetic construct QL-ELE-00-020 73 bp View
JD009658.1 emblrelpat Sequence 9 from Patent WO2014170345. 14416 bp synthetic construct QL-ELE-00-020 73 bp View
JD011419.1 emblrelpat Sequence 8 from Patent WO2014170327. 6426 bp synthetic construct QL-ELE-00-020 73 bp View
JD011420.1 emblrelpat Sequence 9 from Patent WO2014170327. 14416 bp synthetic construct QL-ELE-00-020 73 bp View
JX434027.1 nt GM reference vector pTLH10, partial... 3360 bp GM reference vector pTLH10 QL-ELE-00-020 73 bp View
JX434028.1 nt GM reference vector pTLE8, partial ... 3664 bp GM reference vector pTLE8 QL-ELE-00-020 73 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.