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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 166 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_GY319592 nrnl1 Sequence 1 from patent US 7982105. 13673 bp unidentified QL-ELE-00-019 108 bp View
NRN_GY319593 nrnl1 Sequence 2 from patent US 7982105. 15584 bp unidentified QL-ELE-00-019 108 bp View
NRN_HB432195 nrnl1 Sequence 4816 from Patent WO2009073069. 12554 bp unidentified QL-ELE-00-019 108 bp View
NRN_HC185829 nrnl1 Sequence 94614 from Patent WO200913... 11722 bp unidentified QL-ELE-00-019 108 bp View
NRN_HH979272 nrnl1 Sequence 1 from Patent EP1720983. 8296 bp unidentified QL-ELE-00-019 108 bp View
OM397417.1 nt Synthetic construct 5-enolpyruvylsh... 2075 bp synthetic construct QL-ELE-00-019 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.