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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 166 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FW310538.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13905 bp synthetic construct QL-ELE-00-019 108 bp View
FW310539.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13888 bp synthetic construct QL-ELE-00-019 108 bp View
FW310540.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13888 bp synthetic construct QL-ELE-00-019 108 bp View
FW377973.1 emblrelpat Transgenic plant event detection. 132 bp synthetic construct QL-ELE-00-019 108 bp View
GM712982.1 emblrelpat Sequence 75 from Patent WO2008092866. 132 bp synthetic construct QL-ELE-00-019 108 bp View
GY281747.1 emblrelpat Sequence 74 from patent US 7973219. 1587 bp unidentified QL-ELE-00-019 108 bp View
GY319592.1 emblrelpat Sequence 1 from patent US 7982105. 13673 bp unidentified QL-ELE-00-019 108 bp View
GY319593.1 emblrelpat Sequence 2 from patent US 7982105. 15584 bp unidentified QL-ELE-00-019 108 bp View
GZ210204.1 emblrelpat Sequence 213 from patent US 8138393. 13596 bp unidentified QL-ELE-00-019 108 bp View
GZ210205.1 emblrelpat Sequence 214 from patent US 8138393. 13559 bp unidentified QL-ELE-00-019 108 bp View
GZ210206.1 emblrelpat Sequence 215 from patent US 8138393. 13905 bp unidentified QL-ELE-00-019 108 bp View
GZ210207.1 emblrelpat Sequence 216 from patent US 8138393. 13905 bp unidentified QL-ELE-00-019 108 bp View
GZ210208.1 emblrelpat Sequence 217 from patent US 8138393. 13905 bp unidentified QL-ELE-00-019 108 bp View
GZ210209.1 emblrelpat Sequence 218 from patent US 8138393. 13888 bp unidentified QL-ELE-00-019 108 bp View
GZ210210.1 emblrelpat Sequence 219 from patent US 8138393. 13888 bp unidentified QL-ELE-00-019 108 bp View
GZ439300.1 emblrelpat Sequence 5 from patent US 8212113. 7450 bp unidentified QL-ELE-00-019 108 bp View
GZ859529.1 emblrelpat Sequence 1352 from patent US 8410336. 11722 bp unidentified QL-ELE-00-019 108 bp View
HB432195.1 emblrelpat Sequence 4816 from Patent WO2009073069. 12554 bp synthetic construct QL-ELE-00-019 108 bp View
HC185829.1 emblrelpat Sequence 94614 from Patent WO200913... 11722 bp Zea mays QL-ELE-00-019 108 bp View
HC725756.1 emblrelpat Sequence 36443 from Patent WO201003... 11722 bp synthetic construct QL-ELE-00-019 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.