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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GX285782.1 emblrelpat Sequence 13 from patent US 7741118. 3531 bp unidentified QL-ELE-00-016 74 bp View
GY472631.1 emblrelpat Sequence 1 from patent US 8034997. 3534 bp unidentified QL-ELE-00-016 74 bp View
GY472633.1 emblrelpat Sequence 5 from patent US 8034997. 5480 bp unidentified QL-ELE-00-016 74 bp View
GY508712.1 emblrelpat Sequence 5 from patent US 8049071. 6426 bp unidentified QL-ELE-00-016 74 bp View
GY508713.1 emblrelpat Sequence 6 from patent US 8049071. 14416 bp unidentified QL-ELE-00-016 74 bp View
GY508714.1 emblrelpat Sequence 7 from patent US 8049071. 6916 bp unidentified QL-ELE-00-016 74 bp View
GY508715.1 emblrelpat Sequence 8 from patent US 8049071. 3801 bp unidentified QL-ELE-00-016 74 bp View
HB386792.1 emblrelpat Sequence 5 from Patent WO2009064652. 6426 bp synthetic construct QL-ELE-00-016 74 bp View
HB386793.1 emblrelpat Sequence 6 from Patent WO2009064652. 14416 bp synthetic construct QL-ELE-00-016 74 bp View
HB386794.1 emblrelpat Sequence 7 from Patent WO2009064652. 6916 bp synthetic construct QL-ELE-00-016 74 bp View
HB386795.1 emblrelpat Sequence 8 from Patent WO2009064652. 3801 bp synthetic construct QL-ELE-00-016 74 bp View
HJ186362.1 emblrelpat Sequence 1 from patent US 8344207. 3534 bp unidentified QL-ELE-00-016 74 bp View
HJ186364.1 emblrelpat Sequence 5 from patent US 8344207. 5480 bp unidentified QL-ELE-00-016 74 bp View
HJ188112.1 emblrelpat Sequence 5 from patent US 8455198. 6426 bp unidentified QL-ELE-00-016 74 bp View
HJ188113.1 emblrelpat Sequence 6 from patent US 8455198. 14416 bp unidentified QL-ELE-00-016 74 bp View
HJ188114.1 emblrelpat Sequence 7 from patent US 8455198. 6916 bp unidentified QL-ELE-00-016 74 bp View
HJ188115.1 emblrelpat Sequence 8 from patent US 8455198. 3801 bp unidentified QL-ELE-00-016 74 bp View
HQ154128.1 nt Oryza sativa Japonica Group transge... 6213 bp Oryza sativa Japonica Group QL-ELE-00-016 74 bp View
HQ154128.1 emblreltgn Oryza sativa Japonica Group transge... 6213 bp Oryza sativa Japonica Group QL-ELE-00-016 74 bp View
I41421.1 emblrelpat Sequence 5 from patent US 5625136. 1845 bp unidentified QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.