European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU816953.1 nt Synthetic construct Cry1ab/ac (cry1... 1830 bp synthetic construct QL-ELE-00-016 74 bp View
EU880444.1 emblreltgn Oryza sativa Indica Group transgeni... 10536 bp Oryza sativa Indica Group QL-ELE-00-016 74 bp View
EU880444.1 emblreltgn Oryza sativa Indica Group transgeni... 10536 bp Oryza sativa Indica Group QL-ELE-00-016 74 bp View
EU880444.1 nt Oryza sativa Indica Group transgeni... 10536 bp Oryza sativa Indica Group QL-ELE-00-016 74 bp View
EU880444.1 nt Oryza sativa Indica Group transgeni... 10536 bp Oryza sativa Indica Group QL-ELE-00-016 74 bp View
FB292242.1 emblrelpat Sequence 11 from Patent WO2006107954. 1845 bp synthetic construct QL-ELE-00-016 74 bp View
FB707505.1 emblrelpat Sequence 1 from Patent WO2007027777. 3534 bp synthetic construct QL-ELE-00-016 74 bp View
FB707509.1 emblrelpat Sequence 5 from Patent WO2007027777. 5480 bp synthetic construct QL-ELE-00-016 74 bp View
GU583853.1 emblreltgn Gossypium hirsutum transgenic culti... 4074 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GU583853.1 nt Gossypium hirsutum transgenic culti... 4074 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GU583854.1 emblreltgn Gossypium hirsutum transgenic culti... 2471 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GU583854.1 nt Gossypium hirsutum transgenic culti... 2471 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GU583855.1 emblreltgn Gossypium hirsutum transgenic culti... 2382 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GU583855.1 nt Gossypium hirsutum transgenic culti... 2382 bp Gossypium hirsutum QL-ELE-00-016 74 bp View
GX285772.1 emblrelpat Sequence 3 from patent US 7741118. 1845 bp unidentified QL-ELE-00-016 74 bp View
GX285774.1 emblrelpat Sequence 5 from patent US 7741118. 1921 bp unidentified QL-ELE-00-016 74 bp View
GX285776.1 emblrelpat Sequence 7 from patent US 7741118. 1767 bp unidentified QL-ELE-00-016 74 bp View
GX285778.1 emblrelpat Sequence 9 from patent US 7741118. 3534 bp unidentified QL-ELE-00-016 74 bp View
GX285780.1 emblrelpat Sequence 11 from patent US 7741118. 3534 bp unidentified QL-ELE-00-016 74 bp View
GX285781.1 emblrelpat Sequence 12 from patent US 7741118. 3534 bp unidentified QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.