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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
BD276257.1 emblrelpat Pesticidal Fusions. 2062 bp synthetic construct QL-ELE-00-016 74 bp View
BD276261.1 emblrelpat Pesticidal Fusions. 2788 bp synthetic construct QL-ELE-00-016 74 bp View
BD276262.1 emblrelpat Pesticidal Fusions. 2692 bp synthetic construct QL-ELE-00-016 74 bp View
BD276263.1 emblrelpat Pesticidal Fusions. 2436 bp synthetic construct QL-ELE-00-016 74 bp View
BD276264.1 emblrelpat Pesticidal Fusions. 2788 bp synthetic construct QL-ELE-00-016 74 bp View
BD276265.1 emblrelpat Pesticidal Fusions. 2692 bp synthetic construct QL-ELE-00-016 74 bp View
BD276266.1 emblrelpat Pesticidal Fusions. 2436 bp synthetic construct QL-ELE-00-016 74 bp View
BD342976.1 emblrelpat Promotors for expressing DNA sequen... 1845 bp synthetic construct QL-ELE-00-016 74 bp View
CS803547.1 emblrelpat Sequence 16 from Patent WO2007091277. 4248 bp synthetic construct QL-ELE-00-016 74 bp View
DI018282.1 emblrelpat Synthetic insecticidal toxin gene f... 1865 bp unidentified QL-ELE-00-016 74 bp View
DI161077.1 emblrelpat RICE LEAF FOLDER TOLERANT RICE TRAN... 1865 bp Bacillus thuringiensis QL-ELE-00-016 74 bp View
DI171015.1 emblrelpat KR 1020090005632-A/7: Primer for id... 1865 bp artificial sequences QL-ELE-00-016 74 bp View
DI185969.1 emblrelpat KR 1020110026545-A/1: Cabbage resis... 1865 bp Bacillus thuringiensis QL-ELE-00-016 74 bp View
DI438163.1 emblrelpat KR 1020140117257-A/1: Novel Bacillu... 1857 bp Bacillus thuringiensis QL-ELE-00-016 74 bp View
DI495731.1 emblrelpat KR 1020150058632-A/3: A method for ... 1863 bp unidentified QL-ELE-00-016 74 bp View
DM164157.1 emblrelpat NUCLEOTIDE SEQUENCES ENCODING INSEC... 3534 bp unidentified QL-ELE-00-016 74 bp View
DM164159.1 emblrelpat NUCLEOTIDE SEQUENCES ENCODING INSEC... 5480 bp unidentified QL-ELE-00-016 74 bp View
DM460255.1 emblrelpat TRANSGENIC BRINJAL (SOLANUM MELONGE... 4248 bp unidentified QL-ELE-00-016 74 bp View
E29365.1 emblrelpat Method for detecting insect-toleran... 1845 bp unidentified QL-ELE-00-016 74 bp View
EA731070.1 emblrelpat Sequence 15 from patent US 7368241. 4973 bp unidentified QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.