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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR811086.1 emblrelpat Sequence 1 from patent US 7019197. 2062 bp unidentified QL-ELE-00-016 74 bp View
AR811087.1 emblrelpat Sequence 2 from patent US 7019197. 2062 bp unidentified QL-ELE-00-016 74 bp View
AR811091.1 emblrelpat Sequence 6 from patent US 7019197. 2788 bp unidentified QL-ELE-00-016 74 bp View
AR811092.1 emblrelpat Sequence 7 from patent US 7019197. 2692 bp unidentified QL-ELE-00-016 74 bp View
AR811093.1 emblrelpat Sequence 8 from patent US 7019197. 2436 bp unidentified QL-ELE-00-016 74 bp View
AR811094.1 emblrelpat Sequence 9 from patent US 7019197. 2788 bp unidentified QL-ELE-00-016 74 bp View
AR811095.1 emblrelpat Sequence 10 from patent US 7019197. 2692 bp unidentified QL-ELE-00-016 74 bp View
AR811096.1 emblrelpat Sequence 11 from patent US 7019197. 2436 bp unidentified QL-ELE-00-016 74 bp View
AX044385.1 emblrelpat Sequence 1 from Patent WO0066755. 2062 bp synthetic construct QL-ELE-00-016 74 bp View
AX044386.1 emblrelpat Sequence 2 from Patent WO0066755. 2062 bp synthetic construct QL-ELE-00-016 74 bp View
AX044390.1 emblrelpat Sequence 6 from Patent WO0066755. 2788 bp synthetic construct QL-ELE-00-016 74 bp View
AX044391.1 emblrelpat Sequence 7 from Patent WO0066755. 2692 bp synthetic construct QL-ELE-00-016 74 bp View
AX044392.1 emblrelpat Sequence 8 from Patent WO0066755. 2436 bp synthetic construct QL-ELE-00-016 74 bp View
AX044393.1 emblrelpat Sequence 9 from Patent WO0066755. 2788 bp synthetic construct QL-ELE-00-016 74 bp View
AX044394.1 emblrelpat Sequence 10 from Patent WO0066755. 2692 bp synthetic construct QL-ELE-00-016 74 bp View
AX044395.1 emblrelpat Sequence 11 from Patent WO0066755. 2436 bp synthetic construct QL-ELE-00-016 74 bp View
AX441374.1 emblrelpat Sequence 5 from Patent EP1209237. 1845 bp synthetic construct QL-ELE-00-016 74 bp View
AX453870.1 emblrelpat Sequence 5 from Patent EP1213356. 1845 bp synthetic construct QL-ELE-00-016 74 bp View
AY126450.1 nt Synthetic construct insecticidal pr... 1865 bp synthetic construct QL-ELE-00-016 74 bp View
BD276256.1 emblrelpat Pesticidal Fusions. 2062 bp synthetic construct QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.