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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U12640.1 nt GUS gene fusion vector pBI101.3 T-D... 5352 bp Cloning vector pBI101.3 QL-ELE-00-007 180 bp View
U12640.1 nt GUS gene fusion vector pBI101.3 T-D... 5352 bp Cloning vector pBI101.3 QL-ELE-00-007 180 bp View
U12668.1 nt GUS gene fusion vector pBI101.2 T-D... 5351 bp Cloning vector pBI101.2 QL-ELE-00-007 180 bp View
U12668.1 nt GUS gene fusion vector pBI101.2 T-D... 5351 bp Cloning vector pBI101.2 QL-ELE-00-007 180 bp View
U28417.1 nt Cloning vector p35S-GFP, complete s... 4518 bp Cloning vector p35S-GFP QL-ELE-00-007 180 bp View
U84006.1 nt Expression vector pBSII-LUCINT fire... 5967 bp Expression vector pBSII-LUCINT QL-ELE-00-007 180 bp View
V00087.1 nt Agrobacterium tumefaciens gene enco... 2521 bp Agrobacterium tumefaciens QL-ELE-00-007 180 bp View
X83423.1 nt P.capsici serine/threonine and tyro... 2979 bp Phytophthora capsici QL-ELE-00-007 180 bp View
X84105.1 nt Artificial sequences T-DNA of binai... 5288 bp synthetic construct QL-ELE-00-007 180 bp View
Y18556.1 nt Cloning vector pSLJ8313, T-DNA region 22574 bp Cloning vector pSLJ8313 QL-ELE-00-007 180 bp View
Z29587.1 nt Expression vector pCOR112N (modifie... 4412 bp synthetic construct QL-ELE-00-007 180 bp View
Z29588.1 nt Expression vector pCOR114N (modifie... 4433 bp synthetic construct QL-ELE-00-007 180 bp View
Z29589.1 nt Expression vector pCOR116aN (modifi... 4486 bp synthetic construct QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.